Gene detail information of Glyur000101s00010304.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G31590.1 | 0 | Cellulose-synthase-like C5 |
| NR | XP_007137130.1 | 0 | hypothetical protein PHAVU_009G102200g [Phaseolus vulgaris] |
| COG | YP_004446483.1 | 5.00E-69 | glucomannan 4-beta-mannosyltransferase [Haliscomenobacter hydrossis DSM 1100] |
| Swissprot | tr|Q9SB75|CSLC5_ARATH | 0 | Probable xyloglucan glycosyltransferase 5 |
| trEMBL | tr|V7AU54|V7AU54_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW09124.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00101 | 103339 | 106426 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000101s00010304.1 | PF13641.1 | Glyco_tranf_2_3 | 224 | 455 | 2.10E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.319 |
| SRR1783600 | control | 0.369 |
| SRR1783602 | moderate drought stress | 0.335 |
| SRR1811619 | moderate drought stress | 0.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.117 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.102 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.932 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.992 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.139 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.101 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.007 |
| SRR2967015 | Control (Tissue:root) | 3.482 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.618 |
| SRR9715740 | Leave | 0.365 |
| SRR9715741 | Leave | 0.409 |
| SRR9715739 | Root | 0.454 |
| SRR9715742 | Root | 0.744 |
| SRR9715743 | Root | 0.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.997 |
| SRR8749028 | MeJA induced 9h | 0.044 |
| SRR8749029 | MeJA induced 9h | 0.113 |
| SRR8749030 | Uninduced | 0.080 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.461 |
| SRR8400027 | Control-Root | 3.845 |