Gene detail information of Glyur000102s00010949.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G29940.1 | 7.00E-106 | pathogenesis related homeodomain protein A |
| NR | KHN22663.1 | 0 | Pathogenesis-related homeodomain protein [Glycine soja] |
| Swissprot | tr|P48785|PRH_ARATH | 3.00E-135 | Pathogenesis-related homeodomain protein |
| trEMBL | tr|I1LVM1|I1LVM1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G00540.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00102 | 167294 | 172687 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | PHD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000102s00010949.1 | PF00628.24 | PHD | 221 | 276 | 1.70E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.249 |
| SRR1783600 | control | 3.315 |
| SRR1783602 | moderate drought stress | 3.032 |
| SRR1811619 | moderate drought stress | 3.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.277 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.211 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.836 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.822 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.946 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.034 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.431 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.269 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.477 |
| SRR2967015 | Control (Tissue:root) | 6.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.539 |
| SRR9715740 | Leave | 4.067 |
| SRR9715741 | Leave | 2.891 |
| SRR9715739 | Root | 0.198 |
| SRR9715742 | Root | 2.184 |
| SRR9715743 | Root | 1.469 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.026 |
| SRR8749028 | MeJA induced 9h | 5.079 |
| SRR8749029 | MeJA induced 9h | 3.521 |
| SRR8749030 | Uninduced | 2.850 |
| SRR8749031 | Uninduced | 1.908 |
| SRR8749032 | Uninduced | 1.568 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.627 |
| SRR8400027 | Control-Root | 7.398 |