Gene detail

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Gene detail information of Glyur000102s00010967.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G29890.1	2.00E-146	choline monooxygenase, putative (CMO-like)
NR	XP_004507911.1	0	PREDICTED: choline monooxygenase, chloroplastic-like [Cicer arietinum]
COG	YP_001275338.1	4.00E-79	Rieske (2Fe-2S) domain-containing protein [Roseiflexus sp. RS-1]
Swissprot	tr\|Q9SZR0\|CHMO_ARATH	0	Choline monooxygenase, chloroplastic (Precursor)
trEMBL	tr\|I1MSJ9\|I1MSJ9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G06510.1}

Sequence

Transcript Sequence

>Glyur000102s00010967.2
AAATTGAAGAACCAAAGGGATTGCTGTATTATACGACTAATAACTGCAGAAAGAGAGTGTTCGTAATAATCATAGGAAGACACGCCAACGGCAAGGCATATGCAAATGGCGATGAGCATGCAAGTAACACCCTTTATCCCTCATAATAGTCTCCGACACCGACAGGGACAACCCCAAAACCTTAATTTTCCCAACAAACATTCAACACTCACTTGTTGGTCTCTTCGCAGTTCATCAGACTTCCTTGTATCTCAGGGACTTGTCCACCAGTTCAATCCCAAGATTCCCATAGAGGAAGCAGTTACCCCTCCAACATCATGGTACACTGACCCTTCTTTCTTCCAGCTTGAGCTCGATCGCATCTTCTACAGAGGCTGGCAAGCTGTGGGATCCACGGAGCAGATAAAGGATCCCCATGACTTTTTCACTGGAAGACTAGGAGATGTGGAATTTGTGGTATGTCGAGATGACAGTGGGAAGGTTAGGGCATTCCACAATGTCTGTCGTCATCATGCTTCTCTACTTGCTTCTGGAAGTGGACAGAAGTCCTGCTTTGTCTGCCCTTACCATGGGTGGACATATGGGTTAAATGGAACTCTTCTTAAGGCAACTAGAATATCAGGAATGCGGGATTTCAATGTAAATGATTTTGGCCTTGTACCAATCAAAGTAGCTACCTGGGGGCCTTTTGTTCTTCTCAATTTGGAAGAAGAGAACCTTTCTAAGAAGGAAGTTGATAGTCATAATGTGGCAAAGGAATGGCTTGGTAGCTGTTCAGAAATACTGAGTACCAATGGAATTGATTCTTCCTTAAGTTATGTTTGTAGACGTGAATACACCATTGAATGCAATTGGAAGGTATTCTGTGATAACTACTTAGATGGTGGCTATCACGTGCCATATGCGCATAAAGGCCTAGCATCCGGTCTTAATCTCGATTCCTATTTGATCACAATGTTTGAAAAGGTTAGCATCCAAAGTTGTGAAGGCAGCTCAGGGAAAAGCAGAGGGAATTATGATCGACTTGGAAGAGAAGCTATATATGCTTTCGTTTACCCAAATTTCANGATCAATAGGTATGGACCTTGGATGGACACCAATCTTGTACTTCCACTAGGACCCAACAAATGTCAAGTAGTATTTGACTACTATCTTGAACACTCTCTACAGGGTGACACAGATTTCATAGAGAAAAGTTTACAAGACAGTGAGAAAGTGCAGATAGAAGATGTTGTGTTGTGTGAAGGTGTCCAAAAGGGCCTCCAGTCCCCAGCGTATAATGTGGGAAGATATGCTCCTAAAGTTGAACAGGCCATGCACCATTTTCATTGTCTGTTGTATGAAGACCTGACAACATAAATACTCTTGTTCATTGCGGATAATAAATTACCGCAGCAACCGATAAGCTCTGCAACCCATACTGGCAATGGATTTCTGTCTGAATTTGAAATCGATGCATGGTATGAATGATAATACTCTACCAGTGAGGATTTTAGTTTGATCAATCGAAGTTGATATATATCCAGTAATACAGGTTTGTCCAACTTGCAGTAGTAGTAGCTTTACGTATCTCTTGCTGAACTTCGTGGTTGTTTGGAAATCTGCTATAGTGAATTTTGCTGCTTCAGTTT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00102	285338	289360	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00499	CMO	EC:1.14.15.7	Glycine, serine and threonine metabolism	map00260

Gene Ontology

biological_process

GO:0006725 cellular aromatic compound metabolic process

GO:0019439 aromatic compound catabolic process

GO:0055114 oxidation-reduction process

molecular_function GO:0005506 iron ion binding GO:0016491 oxidoreductase activity GO:0016708 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor GO:0051537 2 iron, 2 sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000102s00010967.2	PF00355.21	Rieske	93	171	4.10E-17
Glyur000102s00010967.2	PF00848.14	Ring_hydroxyl_A	239	415	1.30E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.565
SRR1783600	control	15.375
SRR1783602	moderate drought stress	14.292
SRR1811619	moderate drought stress	13.826

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.045
DRR006520	Root Summer glycyrrhizin high producing strain	14.857
DRR006521	Root Winter glycyrrhizin high producing strain	18.128
DRR006522	Root Winter glycyrrhizin high producing strain	17.461
DRR006523	Root Summer glycyrrhizin low producing strain	18.517
DRR006524	Root Summer glycyrrhizin low producing strain	18.322
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.583
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.072

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	18.615
SRR2868004	Drought Stress(Tissue:root)	17.414
SRR2967015	Control (Tissue:root)	24.453

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	9.514
SRR9715740	Leave	15.717
SRR9715741	Leave	13.346
SRR9715739	Root	3.601
SRR9715742	Root	7.366
SRR9715743	Root	6.650

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.978
SRR8749028	MeJA induced 9h	4.961
SRR8749029	MeJA induced 9h	2.859
SRR8749030	Uninduced	7.601
SRR8749031	Uninduced	2.452
SRR8749032	Uninduced	4.016

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	20.294
SRR8400027	Control-Root	21.151