Gene detail

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Gene detail information of Glyur000102s00010974.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G17220.2	1.00E-84	Protein kinase superfamily protein
NR	XP_003610014.1	4.99E-165	Protein kinase 2B [Medicago truncatula]
COG	YP_007779934.1	9.00E-20	Serine/threonine protein kinase [Roseburia intestinalis XB6B4]
Swissprot	tr\|P27450\|CX32_ARATH	3.00E-88	Probable serine/threonine-protein kinase Cx32, chloroplastic (Precursor)
trEMBL	tr\|G7JT87\|G7JT87_MEDTR	2.00E-165	Serine/Threonine kinase family protein {ECO:0000313\|EMBL:AES92211.1}

Sequence

Transcript Sequence

>Glyur000102s00010974.1
TTCAAGTTTCAACATTTCTAAATATTCAATCTTGCCTTTTTTCCCCTGCTTTTCTGCTAGCATCNGCTGCTAGCCTGCTACCTTAATTTGTTTAAGGAAAGAAAGAAAGAGCAGAAACAAGTTATATGGGGAACTGTTGGAGTCTTCACTCAGGCGGTCTTCCAAACTCCAATACTGCTGCCCCTGACCCCAACAACCAATCAGGTAGTATTCAGTTTTTTGCTGGTCACAGCAACTTGGGATTAATACAGAATGGCAATTCTGTTTTTCTTGGGAGTAGCAGCCACTCTGGAGGAACCAGCCGACTCTTTAGTAGTAACTACTCAACGGACAACAATACTAAACTGAAGGAAGCCACTAAAAATTTCAGTGCTGACACTGTGATAGGAGAGGGGGGGTTCGGTAAAGTATACAAGGGTTTGGTTAAGGAAAGAGCAGCATCAAAAAGAGAGGTGAATTTCGTGGGAAGACTTTCTCATCCCAACCTTATAAAGCTGTTGGGATTCGGGAATGAGGATGGAGGTTCAAATGTTCAGCCACTTTCATGGGACACAAGGCTAAAAGTTATGATTGGGGTAGCCAAGGGACTAAATTTCCTTCATTCCTTGGAGAAGAAAATTATATACAGAGATCTCAAGCCCTCAAATATACTACTTGACAAGGCATATACACCCAAGTTATCAGACTTTGGCTTAGCCAAATGTGGTCCTTCTGCTGATCAAAGTCACGTANCAACGCGGGTAATGGGAACAAGCGGCCATGCTGCTCCCGAGTACATTGCCACAGGTCATTTGTACGTGAAAAGTGATGTGTATGGATTTGGGATTGTTTTGGTGGAGATGCTGACTGGCAAGTGGATAGGTGATATTCTACGCCTCCCTAAGGAGAAGTCCTTACAGGATTGGCTCAAATCAAATCTGTTAAATAGAGTGAAAATGAGAAGCACTATGGATGTGAAGTTGGAAGGCAGGTATCCTCCCAACTTAGCTTCACAGGTAGCTCAACTTACTCTCAAATGCATCCAAACAAACCCCAAAGTTAGGCCATCAATGAAGGAAGTTCTTGAAACATTGGAACAGATTGAAGCAGCCAATGAGAAACCAGCTGATAACAAAAACAGGGCTACCCATTCCCAGGTAGTTCAGCCAGATGGTGGTTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00102	332628	335561	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.2.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000102s00010974.1	PF00069.20	Pkinase	136	315	9.60E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.407
SRR1783600	control	1.362
SRR1783602	moderate drought stress	1.654
SRR1811619	moderate drought stress	1.678

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.511
DRR006520	Root Summer glycyrrhizin high producing strain	0.559
DRR006521	Root Winter glycyrrhizin high producing strain	0.191
DRR006522	Root Winter glycyrrhizin high producing strain	0.187
DRR006523	Root Summer glycyrrhizin low producing strain	0.174
DRR006524	Root Summer glycyrrhizin low producing strain	0.082
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.144
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.323

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	8.212
SRR2868004	Drought Stress(Tissue:root)	13.077
SRR2967015	Control (Tissue:root)	9.395

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	21.409
SRR9715740	Leave	32.588
SRR9715741	Leave	31.143
SRR9715739	Root	1.729
SRR9715742	Root	3.130
SRR9715743	Root	2.320

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.848
SRR8749028	MeJA induced 9h	1.168
SRR8749029	MeJA induced 9h	1.394
SRR8749030	Uninduced	0.604
SRR8749031	Uninduced	0.422
SRR8749032	Uninduced	0.343

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	9.072
SRR8400027	Control-Root	8.591