Gene detail information of Glyur000103s00007416.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G55320.10P-glycoprotein 20
NRKEH44488.10ABC transporter B family protein [Medicago truncatula]
COGYP_005367043.11.00E-93efflux ABC transporter permease/ATP-binding protein [Corallococcus coralloides DSM 2259]
Swissprottr|Q9M3B9|AB20B_ARATH0ABC transporter B family member 20
trEMBLtr|A0A072VSU0|A0A072VSU0_MEDTR0ABC transporter B family protein {ECO:0000313|EMBL:KEH44488.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001033336542941+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05658ABCB1, CD243 EC:3.6.3.44 ABC transporters map02010
Bile secretionmap04976
MicroRNAs in cancermap05206


Gene Ontology

biological_process

GO:0006810  transport

GO:0055085  transmembrane transport


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0005524  ATP binding

GO:0016887  ATPase activity

GO:0042626  ATPase activity, coupled to transmembrane movement of substances

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000103s00007416.1PF00664.18ABC_membrane863493.70E-34
Glyur000103s00007416.1PF00005.22ABC_tran4215652.10E-25
Glyur000103s00007416.1PF00664.18ABC_membrane87810122.50E-19
Glyur000103s00007416.1PF00005.22ABC_tran111712651.90E-29


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.958
SRR1783600control7.967
SRR1783602moderate drought stress8.850
SRR1811619moderate drought stress8.822

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.815
DRR006520Root Summer glycyrrhizin high producing strain6.669
DRR006521Root Winter glycyrrhizin high producing strain11.965
DRR006522Root Winter glycyrrhizin high producing strain11.591
DRR006523Root Summer glycyrrhizin low producing strain10.962
DRR006524Root Summer glycyrrhizin low producing strain10.965
DRR006525Leaf Summer glycyrrhizin high producing strain5.835
DRR006526Leaf Summer glycyrrhizin high producing strain5.722

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.925
SRR2868004Drought Stress(Tissue:root)29.320
SRR2967015Control (Tissue:root)26.250

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.103
SRR9715740Leave10.112
SRR9715741Leave15.253
SRR9715739Root3.423
SRR9715742Root16.023
SRR9715743Root13.065

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.530
SRR8749028MeJA induced 9h18.619
SRR8749029MeJA induced 9h13.584
SRR8749030Uninduced30.489
SRR8749031Uninduced36.231
SRR8749032Uninduced29.991

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.679
SRR8400027Control-Root18.159

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved