Gene detail information of Glyur000103s00007429.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G65750.102-oxoglutarate dehydrogenase, E1 component
NRKEH44475.10E1 subunit-like 2-oxoglutarate dehydrogenase [Medicago truncatula]
COGYP_005032806.102-oxoglutarate dehydrogenase complex,thiamin-binding component (E1) [Azospirillum brasilense Sp245]
trEMBLtr|A0A072W2L0|A0A072W2L0_MEDTR0E1 subunit-like 2-oxoglutarate dehydrogenase {ECO:0000313|EMBL:KEH44475.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001039110995986-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00164OGDH, sucA EC:1.2.4.2 Carbon metabolism map01200
Citrate cycle (TCA cycle)map00020
Lysine degradationmap00310
Tryptophan metabolismmap00380


Gene Ontology

biological_process

GO:0006099  tricarboxylic acid cycle

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004591  oxoglutarate dehydrogenase (succinyl-transferring) activity

GO:0016624  oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor

GO:0030976  thiamine pyrophosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000103s00007429.1PF00676.15E1_dh2495697.60E-61
Glyur000103s00007429.1PF02779.19Transket_pyr6398531.70E-64


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.195
SRR1783600control7.181
SRR1783602moderate drought stress14.385
SRR1811619moderate drought stress14.192

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.415
DRR006520Root Summer glycyrrhizin high producing strain6.435
DRR006521Root Winter glycyrrhizin high producing strain6.317
DRR006522Root Winter glycyrrhizin high producing strain6.317
DRR006523Root Summer glycyrrhizin low producing strain2.908
DRR006524Root Summer glycyrrhizin low producing strain2.947
DRR006525Leaf Summer glycyrrhizin high producing strain0.071
DRR006526Leaf Summer glycyrrhizin high producing strain0.086

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.195
SRR2868004Drought Stress(Tissue:root)0.467
SRR2967015Control (Tissue:root)0.058

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.119
SRR9715740Leave0.213
SRR9715741Leave0.101
SRR9715739Root0.717
SRR9715742Root2.413
SRR9715743Root2.730

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.342
SRR8749028MeJA induced 9h1.510
SRR8749029MeJA induced 9h0.592
SRR8749030Uninduced0.367
SRR8749031Uninduced0.241
SRR8749032Uninduced0.587

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.267
SRR8400027Control-Root12.318

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved