Gene detail information of Glyur000103s00007434.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G55400.10methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS)
NRXP_004497294.10PREDICTED: methionine--tRNA ligase-like [Cicer arietinum]
COGYP_007170058.10methionyl-tRNA synthetase [Halothece sp. PCC 7418]
Swissprottr|Q9ZTS1|SYM_ORYSJ6.00E-48Probable methionine--tRNA ligase
trEMBLtr|I1LFC1|I1LFC1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G43550.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00103138688143928+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01874MARS, metG EC:6.1.1.10 Selenocompound metabolism map00450
Aminoacyl-tRNA biosynthesismap00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006431  methionyl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004825  methionine-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000103s00007434.1PF09334.6tRNA-synt_1g684263.90E-122


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.280
SRR1783600control11.350
SRR1783602moderate drought stress8.660
SRR1811619moderate drought stress8.574

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.151
DRR006520Root Summer glycyrrhizin high producing strain10.045
DRR006521Root Winter glycyrrhizin high producing strain7.312
DRR006522Root Winter glycyrrhizin high producing strain7.190
DRR006523Root Summer glycyrrhizin low producing strain8.788
DRR006524Root Summer glycyrrhizin low producing strain8.727
DRR006525Leaf Summer glycyrrhizin high producing strain25.819
DRR006526Leaf Summer glycyrrhizin high producing strain25.627

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.304
SRR2868004Drought Stress(Tissue:root)15.612
SRR2967015Control (Tissue:root)14.908

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave20.593
SRR9715740Leave29.533
SRR9715741Leave20.969
SRR9715739Root2.996
SRR9715742Root7.033
SRR9715743Root6.676

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.731
SRR8749028MeJA induced 9h9.987
SRR8749029MeJA induced 9h5.944
SRR8749030Uninduced3.736
SRR8749031Uninduced2.004
SRR8749032Uninduced1.394

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.189
SRR8400027Control-Root16.476

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved