Gene detail information of Glyur000103s00007438.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38140.1 | 7.00E-15 | RING/U-box superfamily protein |
| NR | KHN23136.1 | 1.15E-49 | RING-H2 finger protein ATL18 [Glycine soja] |
| Swissprot | tr|Q9SZL4|ATL18_ARATH | 1.00E-21 | RING-H2 finger protein ATL18 (Precursor) |
| trEMBL | tr|K7LM19|K7LM19_SOYBN | 4.00E-52 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G43518.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00103 | 161085 | 161447 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000103s00007438.1 | PF13639.1 | zf-RING_2 | 61 | 105 | 9.30E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.050 |
| SRR1783600 | control | 0.051 |
| SRR1783602 | moderate drought stress | 0.052 |
| SRR1811619 | moderate drought stress | 0.052 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.294 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.300 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.302 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.505 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.667 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.361 |
| SRR2967015 | Control (Tissue:root) | 0.839 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.161 |
| SRR9715740 | Leave | 0.083 |
| SRR9715741 | Leave | 0.090 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.966 |
| SRR8749028 | MeJA induced 9h | 0.116 |
| SRR8749029 | MeJA induced 9h | 0.160 |
| SRR8749030 | Uninduced | 0.366 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.222 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.740 |
| SRR8400027 | Control-Root | 0.666 |