Gene detail information of Glyur000103s00007446.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G23420.1 | 4.00E-33 | high-mobility group box 6 |
NR | XP_004497256.1 | 4.30E-112 | PREDICTED: high mobility group B protein 7-like isoform X1 [Cicer arietinum] |
Swissprot | tr|Q8LDF9|HMGB7_ARATH | 6.00E-48 | High mobility group B protein 7 |
trEMBL | tr|A0A072VSQ8|A0A072VSQ8_MEDTR | 9.00E-107 | High mobility group (HMG)-box protein {ECO:0000313|EMBL:KEH44448.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00103 | 195423 | 197240 | - |
Gene family
Gene family | subfamily |
---|---|
Transcription Factors Family | HMG |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
-- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000103s00007446.1 | PF00505.14 | HMG_box | 102 | 171 | 2.60E-23 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 16.544 |
SRR1783600 | control | 16.405 |
SRR1783602 | moderate drought stress | 10.363 |
SRR1811619 | moderate drought stress | 10.257 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 22.968 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 22.446 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 15.509 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 15.138 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 12.331 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 11.649 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.394 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.355 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 75.555 |
SRR2868004 | Drought Stress(Tissue:root) | 39.251 |
SRR2967015 | Control (Tissue:root) | 39.289 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 13.702 |
SRR9715740 | Leave | 4.101 |
SRR9715741 | Leave | 6.978 |
SRR9715739 | Root | 8.109 |
SRR9715742 | Root | 8.639 |
SRR9715743 | Root | 8.129 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 149.489 |
SRR8749028 | MeJA induced 9h | 47.720 |
SRR8749029 | MeJA induced 9h | 78.094 |
SRR8749030 | Uninduced | 5.580 |
SRR8749031 | Uninduced | 4.342 |
SRR8749032 | Uninduced | 14.601 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 54.274 |
SRR8400027 | Control-Root | 44.071 |