Gene detail information of Glyur000103s00007446.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G23420.14.00E-33high-mobility group box 6
NRXP_004497256.14.30E-112PREDICTED: high mobility group B protein 7-like isoform X1 [Cicer arietinum]
Swissprottr|Q8LDF9|HMGB7_ARATH6.00E-48High mobility group B protein 7
trEMBLtr|A0A072VSQ8|A0A072VSQ8_MEDTR9.00E-107High mobility group (HMG)-box protein {ECO:0000313|EMBL:KEH44448.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00103195423197240-


Gene family

Gene familysubfamily
Transcription Factors FamilyHMG


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000103s00007446.1PF00505.14HMG_box1021712.60E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.544
SRR1783600control16.405
SRR1783602moderate drought stress10.363
SRR1811619moderate drought stress10.257

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.968
DRR006520Root Summer glycyrrhizin high producing strain22.446
DRR006521Root Winter glycyrrhizin high producing strain15.509
DRR006522Root Winter glycyrrhizin high producing strain15.138
DRR006523Root Summer glycyrrhizin low producing strain12.331
DRR006524Root Summer glycyrrhizin low producing strain11.649
DRR006525Leaf Summer glycyrrhizin high producing strain9.394
DRR006526Leaf Summer glycyrrhizin high producing strain9.355

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)75.555
SRR2868004Drought Stress(Tissue:root)39.251
SRR2967015Control (Tissue:root)39.289

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.702
SRR9715740Leave4.101
SRR9715741Leave6.978
SRR9715739Root8.109
SRR9715742Root8.639
SRR9715743Root8.129

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h149.489
SRR8749028MeJA induced 9h47.720
SRR8749029MeJA induced 9h78.094
SRR8749030Uninduced5.580
SRR8749031Uninduced4.342
SRR8749032Uninduced14.601

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root54.274
SRR8400027Control-Root44.071