Gene detail information of Glyur000103s00007448.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G50410.10SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
NRXP_004497255.10PREDICTED: uncharacterized ATP-dependent helicase C23E6.02-like [Cicer arietinum]
COGYP_008149438.15.00E-38helicase [Sorangium cellulosum So0157-2]
Swissprottr|Q9FIY7|SM3L3_ARATH3.00E-107Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3
trEMBLtr|K7N2N9|K7N2N9_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G23385.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00103204936214806+


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000103s00007448.1PF00176.18SNF2_N3367389.30E-76
Glyur000103s00007448.1PF13923.1zf-C3HC4_27768132.00E-08
Glyur000103s00007448.1PF00271.26Helicase_C94610231.50E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.847
SRR1783600control10.907
SRR1783602moderate drought stress10.014
SRR1811619moderate drought stress9.918

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.314
DRR006520Root Summer glycyrrhizin high producing strain12.330
DRR006521Root Winter glycyrrhizin high producing strain8.969
DRR006522Root Winter glycyrrhizin high producing strain8.742
DRR006523Root Summer glycyrrhizin low producing strain7.500
DRR006524Root Summer glycyrrhizin low producing strain7.649
DRR006525Leaf Summer glycyrrhizin high producing strain7.283
DRR006526Leaf Summer glycyrrhizin high producing strain7.297

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.283
SRR2868004Drought Stress(Tissue:root)18.164
SRR2967015Control (Tissue:root)20.131

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.437
SRR9715740Leave11.626
SRR9715741Leave11.019
SRR9715739Root2.359
SRR9715742Root13.712
SRR9715743Root12.586

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.997
SRR8749028MeJA induced 9h24.680
SRR8749029MeJA induced 9h11.659
SRR8749030Uninduced6.300
SRR8749031Uninduced5.177
SRR8749032Uninduced4.610

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.548
SRR8400027Control-Root19.135

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved