Gene detail information of Glyur000103s00007463.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G64920.12.00E-45COP1-interacting protein 8
NRXP_004497245.11.76E-154PREDICTED: E3 ubiquitin-protein ligase CIP8-like [Cicer arietinum]
Swissprottr|Q9SPL2|CIP8_ARATH5.00E-80E3 ubiquitin-protein ligase CIP8
trEMBLtr|V7BE55|V7BE55_PHAVU1.00E-152Uncharacterized protein {ECO:0000313|EMBL:ESW14746.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00103290971293190-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000103s00007463.1PF14369.1zf-RING_318522.80E-09
Glyur000103s00007463.1PF13639.1zf-RING_22743161.40E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control84.625
SRR1783600control82.821
SRR1783602moderate drought stress143.315
SRR1811619moderate drought stress142.498

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain97.312
DRR006520Root Summer glycyrrhizin high producing strain97.090
DRR006521Root Winter glycyrrhizin high producing strain128.169
DRR006522Root Winter glycyrrhizin high producing strain127.147
DRR006523Root Summer glycyrrhizin low producing strain114.122
DRR006524Root Summer glycyrrhizin low producing strain113.216
DRR006525Leaf Summer glycyrrhizin high producing strain27.653
DRR006526Leaf Summer glycyrrhizin high producing strain27.631

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)71.275
SRR2868004Drought Stress(Tissue:root)89.945
SRR2967015Control (Tissue:root)118.568

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave38.863
SRR9715740Leave42.614
SRR9715741Leave53.487
SRR9715739Root217.857
SRR9715742Root113.117
SRR9715743Root129.831

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h44.010
SRR8749028MeJA induced 9h58.749
SRR8749029MeJA induced 9h40.712
SRR8749030Uninduced24.744
SRR8749031Uninduced24.311
SRR8749032Uninduced60.926

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root98.547
SRR8400027Control-Root96.725

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved