Gene detail information of Glyur000103s00007464.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23340.1 | 2.00E-174 | RNI-like superfamily protein |
| NR | AFK44520.1 | 0 | unknown [Medicago truncatula] |
| COG | YP_008925.1 | 2.00E-25 | hypothetical protein pc1926 [Candidatus Protochlamydia amoebophila UWE25] |
| Swissprot | tr|Q9C5D2|FBL4_ARATH | 3.00E-40 | F-box/LRR-repeat protein 4 |
| trEMBL | tr|I3SW78|I3SW78_MEDTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK44520.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00103 | 294751 | 296974 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000103s00007464.1 | PF13516.1 | LRR_6 | 107 | 129 | 0.019 |
| Glyur000103s00007464.1 | PF13516.1 | LRR_6 | 133 | 156 | 0.03 |
| Glyur000103s00007464.1 | PF13516.1 | LRR_6 | 184 | 207 | 0.75 |
| Glyur000103s00007464.1 | PF13516.1 | LRR_6 | 210 | 233 | 0.25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.376 |
| SRR1783600 | control | 11.350 |
| SRR1783602 | moderate drought stress | 19.324 |
| SRR1811619 | moderate drought stress | 19.466 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.013 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.310 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.646 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.123 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.289 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.227 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.452 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.275 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 29.619 |
| SRR2868004 | Drought Stress(Tissue:root) | 39.601 |
| SRR2967015 | Control (Tissue:root) | 42.141 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 18.997 |
| SRR9715740 | Leave | 21.171 |
| SRR9715741 | Leave | 26.154 |
| SRR9715739 | Root | 52.775 |
| SRR9715742 | Root | 31.724 |
| SRR9715743 | Root | 37.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.009 |
| SRR8749028 | MeJA induced 9h | 17.916 |
| SRR8749029 | MeJA induced 9h | 15.188 |
| SRR8749030 | Uninduced | 8.605 |
| SRR8749031 | Uninduced | 6.579 |
| SRR8749032 | Uninduced | 8.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 33.306 |
| SRR8400027 | Control-Root | 31.498 |