Gene detail information of Glyur000104s00005971.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G33790.1 | 0 | Jojoba acyl CoA reductase-related male sterility protein |
| NR | XP_003539817.1 | 0 | PREDICTED: alcohol-forming fatty acyl-CoA reductase-like isoform 1 [Glycine max] |
| COG | YP_644868.1 | 3.00E-73 | HAD family hydrolase [Rubrobacter xylanophilus DSM 9941] |
| Swissprot | tr|Q9XGY7|FAR_SIMCH | 0 | Alcohol-forming fatty acyl-CoA reductase |
| trEMBL | tr|I1LRE5|I1LRE5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G09270.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00104 | 10561 | 25648 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13356 | FAR | EC:1.2.1.84 | Cutin, suberine and wax biosynthesis | map00073 |
| Peroxisome | map04146 | |||
| Longevity regulating pathway - worm | map04212 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000104s00005971.1 | PF07993.7 | NAD_binding_4 | 17 | 318 | 1.90E-76 |
| Glyur000104s00005971.1 | PF03015.14 | Sterile | 413 | 484 | 1.20E-10 |
| Glyur000104s00005971.1 | PF07993.7 | NAD_binding_4 | 484 | 770 | 6.70E-68 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.670 |
| SRR1783600 | control | 1.672 |
| SRR1783602 | moderate drought stress | 2.263 |
| SRR1811619 | moderate drought stress | 2.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.509 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.471 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.739 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.518 |
| SRR2967015 | Control (Tissue:root) | 9.764 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.159 |
| SRR9715740 | Leave | 1.544 |
| SRR9715741 | Leave | 2.652 |
| SRR9715739 | Root | 7.750 |
| SRR9715742 | Root | 6.089 |
| SRR9715743 | Root | 5.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.049 |
| SRR8749028 | MeJA induced 9h | 0.008 |
| SRR8749029 | MeJA induced 9h | 0.060 |
| SRR8749030 | Uninduced | 0.023 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.065 |
| SRR8400027 | Control-Root | 11.654 |