Gene detail information of Glyur000104s00005972.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G44530.2 | 0 | homolog of histone chaperone HIRA |
| NR | XP_004506155.1 | 0 | PREDICTED: protein HIRA-like isoform X1 [Cicer arietinum] |
| COG | NP_487506.1 | 8.00E-25 | hypothetical protein alr3466 [Nostoc sp. PCC 7120] |
| Swissprot | tr|Q652L2|HIRA_ORYSJ | 0 | Protein HIRA |
| trEMBL | tr|A0A072UVK7|A0A072UVK7_MEDTR | 0 | Histone transcription regulator HIRA protein {ECO:0000313|EMBL:KEH29870.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00104 | 32786 | 40382 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000104s00005972.1 | PF00400.27 | WD40 | 16 | 41 | 0.0022 |
| Glyur000104s00005972.1 | PF00400.27 | WD40 | 58 | 92 | 1.60E-07 |
| Glyur000104s00005972.1 | PF00400.27 | WD40 | 115 | 153 | 6.60E-11 |
| Glyur000104s00005972.1 | PF00400.27 | WD40 | 158 | 195 | 1.50E-08 |
| Glyur000104s00005972.1 | PF00400.27 | WD40 | 254 | 321 | 0.00067 |
| Glyur000104s00005972.1 | PF07569.6 | Hira | 688 | 888 | 1.90E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.038 |
| SRR1783600 | control | 9.133 |
| SRR1783602 | moderate drought stress | 9.393 |
| SRR1811619 | moderate drought stress | 9.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.670 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.656 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.722 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.561 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.365 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.440 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.989 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.267 |
| SRR2868004 | Drought Stress(Tissue:root) | 12.501 |
| SRR2967015 | Control (Tissue:root) | 14.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.968 |
| SRR9715740 | Leave | 7.368 |
| SRR9715741 | Leave | 7.428 |
| SRR9715739 | Root | 1.822 |
| SRR9715742 | Root | 7.893 |
| SRR9715743 | Root | 6.998 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.356 |
| SRR8749028 | MeJA induced 9h | 8.188 |
| SRR8749029 | MeJA induced 9h | 7.142 |
| SRR8749030 | Uninduced | 5.689 |
| SRR8749031 | Uninduced | 5.793 |
| SRR8749032 | Uninduced | 4.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.177 |
| SRR8400027 | Control-Root | 12.266 |