Gene detail

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Gene detail information of Glyur000104s00005985.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G22470.1	NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases
NR	XP_004506166.1	PREDICTED: putative poly [ADP-ribose] polymerase 3-like [Cicer arietinum]
Swissprot	tr\|Q9SWB4\|PARP3_SOYBN	Poly [ADP-ribose] polymerase 3
trEMBL	tr\|G7JIG7\|G7JIG7_MEDTR	Poly(ADP-ribose) polymerase domain protein {ECO:0000313\|EMBL:AES88336.1}

Sequence

Transcript Sequence

>Glyur000104s00005985.1
ATGTCAGCATTGCAGGGCGTTATAATATACAAGGTTGGCCACGTGTCGAGTACTTGCAAGCCCTGGCTGACGTGGCATGCTGTGGTGATGACAGGAAGACTTGGTTTTTCTTGTGAGAAAGAACTTTTTGCATGCACGTGGCACTTCAGGGATGTTGTTGTTGTCTCAGCTACAACCTATGACCATCATGTTCAAGAAACGAGGTCGCATGTTCATGCACATGGGGAAGAGGAGAAGGTGATAATGACAAGGAAGCAGAAAGCGGAGTCCAAGGCACATGAAGTAGAGCATTCACCTAAAAAGGCCAAGGTGGAAACCGAGGATGGTCACACCAATGGAAAATCTGCAGCTGATGTTGCACAAGAATATGATGACCAAGACTTGCTGTTTTACGGTGCAATGGAGAAGTGTCCGGTTTGCAATGGCAATTTGGAGTTTGATGGAAGACGTTATGCTTGCAGAGGGTTCTATAGTGAGTGGGCTAGTTGCACTTTCAGCACCAGGGACCCAACAAGGAAAGAGGAACCCATTAAGCTACCAGATTCTGTTCAGAACTCTCTGGTTTCAGATTTGCTGAAGAAATATCAGGACCCGAGTCGCAGGCCTCACAGGGATTTAGGCTCAGCTGTCAAACCTTTTACTGGAATGATGATTTCTCTGATGGGTCGTCTTAATCGGACACATCATTATTGGAAAACAAGTATTGAAAAGCATGGAGGGAAGGTGGCAAACTCTATTATTGGAGCAACTTGTTTGGTGGCTTCACCTGCTGAGCGAGAACGTGGTGGCACATCCAAACTTGCAGAAGCCATGGAGAGGGGTATACCTGTGGTGAGGGAGGCTTGGTTAACTGACAGCATTGAAAAGCAAGAACCACAACCTTTGGAAGCTTATGATCTTGTCTCTGATCTTTCTGTAGCGGGCAAGGGAATCCCCTGGGACAAACAAGATCCTGGGGAGGAGGCTATTGAATCACTCTCAGCAGAACTCAAGCTTTATGGGAAGAGAGGTGTCTATAAAGACACCAAATTGCAGGAACAAGGTGGAGAGATATTTGAAAGAGATGGGATATTGTACAACTGTGCCTTCTCTGTTTGTGACCAAGGGAGAGGACTAAATGACTACTGTGTCATGCAACTGATTGTTGTCCCAGAGAATCGTTTGCATCTGTATTTCAAGAAAGGGAGAGTAGGGGACGATCCAAATGCAGAGGAACGATTAGAAGAGAAGGAGAATGCGGACAATGCTGTGAAAGAGTTTGTGAGGCTCTTTGAGGAAATAACAGGAAATGAATTTGAATCATGGGAAAGAGAGAAGAAGTTCCAGAAGAAGCCATTGAAGTTTTACCCCATTGACATGGATGATGATGTTGANGTTAGACATGGGGCACTGGGTCTTCGGCAACTGGGGATAGCAGTGACACACTGTAAACTTGAGCCTCTGGTTGCAAATTTTATGAAGGTTTTGTGCAGCCAGGAGATCTATAAGTATGCATTGATGGAGATGGGTTATGACTCTCCGGACCTTCCAATAGGAATGGTTACAAATCTTCACCTGAAAAGATGTGAGGAAGTTCTGTNAGAATTCATAGAGAAAGTGAAATCATTGAAAGAGACAGGGCCCAAGGCTGAGGCTGTTTGGTCTGATTTTAGCCAGAGATGGTTCACTCTGATGCACTCCACAAGGCCTTTCACTTTCAGAGATTTTCAGGAGATTGCAGATCATGCTGCTGCTGCCCTGGAGGGTGTTAGAGACATAACCATTGCTTCTCATCTCATAGGGGATATGAGTGGGTCCACTATCGATGACCCATTATCAGACACGTACAAGANATTGGGCTGCTCAATTTCTCCCTTGGAGAAAAATTCAAATGATTACGAGATGATTGTGAAATACCTTGAAAAAACTTATGAACCTGTCAAAGTTGGTGACACTGAATATGGGGTGTCAGTTGAAAACATCTTCGCTGTGGAGTCGAGTGTTTGCCCTTCCTATGAAGACATTGTAAAGCTGCCAAACAAGGTTCTTCTATGGTGTGGATCACGAAGCTCAAATCTTTTGAGGCACTTGCTCAAGGGGTTCTTGCCAGCTATATGTTCACTACCGGTTCCAGGTTACATGTTTGGCAAAGCTATTGTTTGCTCCGATGCTGCAGCAGAGGCTGCAAGATATGGTTTCACTGCTGTGGACAGGCCAGAAGGGTTCTTGGTTTTGGCCATTGCTTCACTAGGAAATGAGATTACCGAGTTGAAAAGCCCACCTGAGGACACAACATCTTTGGAGGAAAAGAAGATTGGAGTGAAGGGGCTGGGGAAGAAGAAAACAGACGAATTAGAGCACTTCGTTTGGAAAGATGACATAAAAGTTCCTTGTGGTCGAATAATTGCCTCAGAGCATGAAGATAGCCCCCTGGAATACAATGAGTATGCTGTCTATGACCCTAAGCAGGTACGCATAAGCTACTTGGTGGGAGTGAAGTATGACGAGAAGGGCATGGTGATGGACACGGCAGAGTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00104	84333	89012	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10798	PARP	EC:2.4.2.30	Base excision repair	map03410
			Apoptosis	map04210
			Apoptosis - fly	map04214
			Longevity regulating pathway - worm	map04212

Gene Ontology

biological_process
GO:0006471 protein ADP-ribosylation

cellular_component GO:0005634 nucleus molecular_function GO:0003950 NAD+ ADP-ribosyltransferase activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000104s00005985.1	PF08063.7	PADR1	126	174	2.70E-17
Glyur000104s00005985.1	PF00533.21	BRCT	210	287	4.80E-09
Glyur000104s00005985.1	PF05406.10	WGR	357	437	5.10E-13
Glyur000104s00005985.1	PF02877.9	PARP_reg	476	610	9.30E-10
Glyur000104s00005985.1	PF00644.15	PARP	612	826	2.50E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.090
SRR1783600	control	0.086
SRR1783602	moderate drought stress	0.537
SRR1811619	moderate drought stress	0.521

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.725
DRR006520	Root Summer glycyrrhizin high producing strain	0.608
DRR006521	Root Winter glycyrrhizin high producing strain	0.219
DRR006522	Root Winter glycyrrhizin high producing strain	0.210
DRR006523	Root Summer glycyrrhizin low producing strain	0.375
DRR006524	Root Summer glycyrrhizin low producing strain	0.342
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.147
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.137

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.335
SRR2868004	Drought Stress(Tissue:root)	0.250
SRR2967015	Control (Tissue:root)	0.100

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.588
SRR9715740	Leave	0.130
SRR9715741	Leave	0.196
SRR9715739	Root	0.171
SRR9715742	Root	0.222
SRR9715743	Root	0.284

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.129
SRR8749028	MeJA induced 9h	0.176
SRR8749029	MeJA induced 9h	0.183
SRR8749030	Uninduced	0.099
SRR8749031	Uninduced	0.067
SRR8749032	Uninduced	0.016

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.331
SRR8400027	Control-Root	0.485