Gene detail information of Glyur000104s00005986.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08290.1 | 5.00E-89 | WIP domain protein 3 |
| NR | NP_001241401.1 | 4.48E-169 | uncharacterized protein LOC100802773 [Glycine max] |
| Swissprot | tr|Q9SGD1|ZWIP3_ARATH | 2.00E-118 | Zinc finger protein WIP3 |
| trEMBL | tr|C6TEB1|C6TEB1_SOYBN | 2.00E-169 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G09400.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00104 | 95748 | 100374 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000104s00005986.1 | PF13894.1 | zf-C2H2_4 | 185 | 204 | 0.00013 |
| Glyur000104s00005986.1 | PF00096.21 | zf-C2H2 | 269 | 291 | 0.011 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 40.362 |
| SRR1783600 | control | 40.500 |
| SRR1783602 | moderate drought stress | 25.878 |
| SRR1811619 | moderate drought stress | 25.676 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.212 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 28.922 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.246 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.773 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.639 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.146 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.602 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.486 |
| SRR2868004 | Drought Stress(Tissue:root) | 22.137 |
| SRR2967015 | Control (Tissue:root) | 28.655 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.691 |
| SRR9715740 | Leave | 3.386 |
| SRR9715741 | Leave | 3.049 |
| SRR9715739 | Root | 51.434 |
| SRR9715742 | Root | 30.106 |
| SRR9715743 | Root | 34.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.399 |
| SRR8749028 | MeJA induced 9h | 10.750 |
| SRR8749029 | MeJA induced 9h | 11.793 |
| SRR8749030 | Uninduced | 7.903 |
| SRR8749031 | Uninduced | 16.997 |
| SRR8749032 | Uninduced | 8.251 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 67.922 |
| SRR8400027 | Control-Root | 49.410 |