Gene detail information of Glyur000104s00005991.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67190.2 | 8.00E-173 | F-box/RNI-like superfamily protein |
| NR | XP_003606113.1 | 0 | F-box/LRR-repeat protein [Medicago truncatula] |
| Swissprot | tr|Q9ZW88|FBL34_ARATH | 0 | F-box/LRR-repeat protein At1g67190 |
| trEMBL | tr|G7JIE1|G7JIE1_MEDTR | 0 | F-box/LRR plant protein {ECO:0000313|EMBL:AES88310.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00104 | 140496 | 143173 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.718 |
| SRR1783600 | control | 6.659 |
| SRR1783602 | moderate drought stress | 8.452 |
| SRR1811619 | moderate drought stress | 8.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.642 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.526 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.364 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.140 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.513 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.387 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.387 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.378 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.274 |
| SRR2868004 | Drought Stress(Tissue:root) | 19.187 |
| SRR2967015 | Control (Tissue:root) | 18.406 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.808 |
| SRR9715740 | Leave | 6.441 |
| SRR9715741 | Leave | 8.155 |
| SRR9715739 | Root | 7.257 |
| SRR9715742 | Root | 5.097 |
| SRR9715743 | Root | 7.275 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.898 |
| SRR8749028 | MeJA induced 9h | 7.079 |
| SRR8749029 | MeJA induced 9h | 3.274 |
| SRR8749030 | Uninduced | 10.542 |
| SRR8749031 | Uninduced | 9.336 |
| SRR8749032 | Uninduced | 6.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.005 |
| SRR8400027 | Control-Root | 12.637 |