Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000104s00005994.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G04030.3	2.00E-75	Homeodomain-like superfamily protein
NR	KHN21148.1	0	Myb family transcription factor APL [Glycine soja]
Swissprot	tr\|Q9SAK5\|APL_ARATH	2.00E-48	Myb family transcription factor APL
trEMBL	tr\|I1LRG6\|I1LRG6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G09490.2}

Sequence

Transcript Sequence

>Glyur000104s00005994.2
GTTTACCTTTTCATAGGTAGCAACATGCATTCTTCTTCCAGAATGCCAATCCCTTCTGAAAGGCACATGTTCCTTCAAACCAGAAATGGGTCTGGTGATTCTGGACTTGTCCTTTCAACTGATGCTAAGCCTAGACTGAAATGGACACAAGATCTTCATGCAAGGTTCATAGAAGCAGTGCATCAGTTAGGTGGAGCAGACAAGGCAACTCCAAAAACGGTAATGAAACTCATGGGTATTCCAGGGCTTACCTTATATCATTTGAAGAGCCATCTTCAGAAGTACAGATTGAGCAAACATATGCATGGACAAAATAGCAACGTGACACACAAAATCAGTGCAGCAACAGGAGAAAGACTCTCTGAAAACAATGGAACACACGTGAACAATTTAAACCCTGGTGGCCCTCAGTCTAACAACAAAGATTTNCACATAAGTGAGGCACTGCAGATGCAGATAGAAGTGCAGAGAAGACTAAATGAACAACTTGAGGTGCAAAGACTCCTGCAGCTCCGGANAGAGGCCCAAGGAAAATACCTTCAGGCTGTGCTGGAAAAAGCTCAAGAAACACTTGGAAGACAGAATTTGGGAATAGTAGGACTTGAAGCTGCCAAAGTTCAACTTTCAGAACTCGNGTCCAAAGTATCCTCTCAGTGCCTGAATTCATCATTTTCAGAGCTGNAAGAGGAGTTACAAGGATTTAGCGCAAAAGAGCAAACACAAACCAATAACCAACCAAATGACTGCTCCATGGACAGTAGTTGCCTGACATCATGTGATGGATCACAAAAGGAGCAAGATATCATAGATATGAGCTTAAGACCCTTCAATGGACATACATTCATGGAACCAAAGGATGTCATAGAGGCTCCCAATCCCAACCTAAGGAACTCTGACATCAAGTGGTGTGATGATCCAGTTAAAAAGAAGTACACTTTTCTCACCCCAATGGGAAAGAATGCAGAAACAGACAATGAAAGCAGCATGTATCCTAAGAAAATAATGATCATGGGGAGACAGTTAGATGGAGAATTCCAGCAGCCAAACACCACTGTGATGGAAGAATCAATGANGAAACCAATGGCTGAGAAGAAGGTTTCTCAAGACTATAGATTGCCTTCTTATTTTGCAGCAACAAAACTGGACCTTAGAAGAACTGAAGATAATGATGCTGCTGCCGCNGGTTGTAAACAGCTGGATTTGAATGGATTCAGTTGGAGCTAAGAAAAACGGAGGATATTTATTTTTATTTATTACAATATCTATCAGCTGCTCTTTCTTTCAGCTCAAGTGGCCACTGGCCAGATACGATGAGTTACTCTTAGTTAAATATTGCAAGTTACAACTAATTAACATAGATCAATTTGTAATTAAGCAGTAGCAGTCACTATNATGGAC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00104	156447	158869	+

Gene family

Gene family	subfamily
Transcription Factors Family	G2-like

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000104s00005994.2	PF00249.26	Myb_DNA-binding	37	88	1.40E-17
Glyur000104s00005994.2	PF14379.1	Myb_CC_LHEQLE	135	183	4.00E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.177
SRR1783600	control	0.180
SRR1783602	moderate drought stress	1.108
SRR1811619	moderate drought stress	1.132

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.083
DRR006520	Root Summer glycyrrhizin high producing strain	0.075
DRR006521	Root Winter glycyrrhizin high producing strain	0.843
DRR006522	Root Winter glycyrrhizin high producing strain	0.776
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.362
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.384

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.309
SRR2868004	Drought Stress(Tissue:root)	0.341
SRR2967015	Control (Tissue:root)	0.527

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	10.082
SRR9715740	Leave	9.856
SRR9715741	Leave	9.235
SRR9715739	Root	0.000
SRR9715742	Root	0.417
SRR9715743	Root	0.385

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.022
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.025

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.374
SRR8400027	Control-Root	0.153