Gene detail information of Glyur000104s00005996.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27500.1 | 2.00E-148 | Glycosyl hydrolase superfamily protein |
| NR | KHN21150.1 | 0 | Glucan endo-1,3-beta-glucosidase 14 [Glycine soja] |
| Swissprot | tr|Q9ZQG9|E1314_ARATH | 0 | Glucan endo-1,3-beta-glucosidase 14 (Precursor) |
| trEMBL | tr|K7LQ60|K7LQ60_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G18970.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00104 | 164871 | 166540 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000104s00005996.1 | PF00332.13 | Glyco_hydro_17 | 57 | 372 | 4.70E-95 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.332 |
| SRR1783600 | control | 0.302 |
| SRR1783602 | moderate drought stress | 1.117 |
| SRR1811619 | moderate drought stress | 1.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.052 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.661 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.275 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.424 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.441 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.333 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.148 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.216 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.703 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.749 |
| SRR2967015 | Control (Tissue:root) | 1.909 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.480 |
| SRR9715740 | Leave | 0.300 |
| SRR9715741 | Leave | 0.454 |
| SRR9715739 | Root | 0.201 |
| SRR9715742 | Root | 0.571 |
| SRR9715743 | Root | 0.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.453 |
| SRR8749028 | MeJA induced 9h | 0.381 |
| SRR8749029 | MeJA induced 9h | 1.476 |
| SRR8749030 | Uninduced | 0.427 |
| SRR8749031 | Uninduced | 3.568 |
| SRR8749032 | Uninduced | 0.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.171 |
| SRR8400027 | Control-Root | 0.816 |