Gene detail

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Gene detail information of Glyur000104s00005999.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G27470.1	7.00E-35	nuclear factor Y, subunit B11
NR	NP_001237961.1	1.96E-73	uncharacterized protein LOC100306382 [Glycine max]
Swissprot	tr\|Q5QMG3\|NFYB2_ORYSJ	9.00E-10	Nuclear transcription factor Y subunit B-2
trEMBL	tr\|C6SZ53\|C6SZ53_SOYBN	7.00E-74	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G18960.1}

Sequence

Transcript Sequence

>Glyur000104s00005999.1
CAAACATTTGTTAATGCTTCCATAAGCTGTATTTGCCCTATGGCACTGTTCCCTTGTATTGGTTATCTTTGGGCCTGGCCCATGTCCAATACAAATTGTAACTCTTTGACAAAAAAAACAGCGATGATAATGACATTGACAAAAAAAAGCGATGATCTTGACCAAAAAAAAAAAAAGCGATGATAATGGCAAAAAAAGCGATGATAATGGCGGGAAAATAAACATTAAACATAGCTAGGAAAGACTGAAAGAGACCCTGCTCCAACCCTAACCCTAATTTCAATCCCAATTCGAAATCGAAGAAGAGAGGAGAATGGCAGAGGCGGAGGAGCTGCCCAGGACTATCGTGCGCCGCGTGGTGAAGGATAAACTCTCCCGTTGCTCCGAAGACGGCGACATCTCCGTCCACAAGGACGCTCTTCTCGCATTCTCCGAAAGCGCTAGGATCTTCATCCACTACCTTTCCGCAACGGCTAATGACATATGTAAGGAGTCAAAGAGGCAAATTATTAATGCTGAGGATATTTTCAAAGCTCTTGAAGAAACTGAGTTCTCTGAGTTTGTTCGCCCTCTAAAAGCTTCTCTTGAAGAGTTTAGGAAGAAGAATGCTGGGAAGAAAGCGGCAGTGTCAAAGGCAAAGGAAAATGAGACGAAAAAGAAAAGGANGTTGGACGGGGAGTCATCTGATAAAGGCGAGGAGGGTGGTGATAGCCATAGCCATAGCGAATAAGATGAAAGTGATGAAGGCAGTTGCATTTGTGGTGATGGTGACTGAGCCAAGGCGTTATGTTTCTATTGTTATTTGGATAATGTACATGATTCCTTGTCACTCGGTTGCTGCTCNCTTCTCTACTTTGTATTAATGCCATAAATACAGCTTTCAGCCAAGTCATGATTGTTTGTCTGCAAAACGCTATCCCCCACCCTCCCAGATGCGAGAAGCCTTATAGGAAAGAATATTCCGTTCTAAATCTTGATTCTTGGGTGTGTATTTTGGGGGGGGTTAAAGAGGGATGAACAGAGACAGGTGTGTACATAAACTGACCTTTTAGATATGCTTGAAAAATGAGCTGCACATGAGCAGTTCTGTTGCATTTGGTTATGAATGCCCGGATCGAATGCGCTACTTGTTGATGCAGCAAATGAGGTTAAGATTAGTGTTGCCGATTGTCCATTTTTCTACCTTAAAGTGAGGTTATGATATTTGGTTA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00104	186883	189082	+

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02326	POLE3	EC:2.7.7.7	Purine metabolism	map00230
			Pyrimidine metabolism	map00240
			DNA replication	map03030
			Base excision repair	map03410
			Nucleotide excision repair	map03420
			HTLV-I infection	map05166

Gene Ontology

cellular_component
GO:0005622 intracellular

molecular_function GO:0043565 sequence-specific DNA binding GO:0046982 protein heterodimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000104s00005999.1	PF00808.18	CBFD_NFYB_HMF	6	75	1.20E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.113
SRR1783600	control	12.083
SRR1783602	moderate drought stress	9.640
SRR1811619	moderate drought stress	9.718

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.178
DRR006520	Root Summer glycyrrhizin high producing strain	9.949
DRR006521	Root Winter glycyrrhizin high producing strain	11.129
DRR006522	Root Winter glycyrrhizin high producing strain	10.748
DRR006523	Root Summer glycyrrhizin low producing strain	5.537
DRR006524	Root Summer glycyrrhizin low producing strain	5.679
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.065
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.331

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	25.268
SRR2868004	Drought Stress(Tissue:root)	22.842
SRR2967015	Control (Tissue:root)	20.945

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	10.920
SRR9715740	Leave	10.357
SRR9715741	Leave	10.509
SRR9715739	Root	13.921
SRR9715742	Root	10.783
SRR9715743	Root	13.658

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.693
SRR8749028	MeJA induced 9h	16.698
SRR8749029	MeJA induced 9h	25.228
SRR8749030	Uninduced	6.947
SRR8749031	Uninduced	10.170
SRR8749032	Uninduced	11.017

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	27.218
SRR8400027	Control-Root	27.288