Gene detail information of Glyur000104s00006019.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G27350.69.00E-121OTU-like cysteine protease family protein
NRKHN21165.10OTU domain-containing protein 5 [Glycine soja]
trEMBLtr|I1LKP4|I1LKP4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G18720.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00104258740264604+


Gene family

Gene familysubfamily
Ubiquitin FamilyOTU


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12655OTUD5, DUBA EC:3.4.19.12 RIG-I-like receptor signaling pathway map04622


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000104s00006019.1PF02338.14OTU2393495.70E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control38.121
SRR1783600control37.910
SRR1783602moderate drought stress44.398
SRR1811619moderate drought stress44.165

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain51.079
DRR006520Root Summer glycyrrhizin high producing strain50.545
DRR006521Root Winter glycyrrhizin high producing strain27.098
DRR006522Root Winter glycyrrhizin high producing strain26.320
DRR006523Root Summer glycyrrhizin low producing strain48.714
DRR006524Root Summer glycyrrhizin low producing strain49.387
DRR006525Leaf Summer glycyrrhizin high producing strain23.846
DRR006526Leaf Summer glycyrrhizin high producing strain23.869

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)45.274
SRR2868004Drought Stress(Tissue:root)43.583
SRR2967015Control (Tissue:root)45.850

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave33.917
SRR9715740Leave36.930
SRR9715741Leave38.643
SRR9715739Root9.824
SRR9715742Root31.741
SRR9715743Root28.874

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h28.491
SRR8749028MeJA induced 9h26.728
SRR8749029MeJA induced 9h20.826
SRR8749030Uninduced21.608
SRR8749031Uninduced18.081
SRR8749032Uninduced14.185

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root58.987
SRR8400027Control-Root52.030

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved