Gene detail information of Glyur000104s00006025.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27310.1 | 1.00E-54 | F-box family protein |
| NR | KEH29827.1 | 1.70E-138 | F-box plant-like protein [Medicago truncatula] |
| Swissprot | tr|Q9XIN8|FB119_ARATH | 2.00E-82 | F-box protein At2g27310 |
| trEMBL | tr|A0A072UJI1|A0A072UJI1_MEDTR | 6.00E-139 | F-box plant-like protein {ECO:0000313|EMBL:KEH29827.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00104 | 286074 | 287102 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000104s00006025.1 | PF00646.28 | F-box | 26 | 63 | 2.20E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.403 |
| SRR1783600 | control | 3.214 |
| SRR1783602 | moderate drought stress | 4.867 |
| SRR1811619 | moderate drought stress | 5.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.432 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.532 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.347 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.211 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.717 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.721 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.181 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.199 |
| SRR2868004 | Drought Stress(Tissue:root) | 57.944 |
| SRR2967015 | Control (Tissue:root) | 26.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.570 |
| SRR9715740 | Leave | 1.388 |
| SRR9715741 | Leave | 7.901 |
| SRR9715739 | Root | 6.981 |
| SRR9715742 | Root | 2.987 |
| SRR9715743 | Root | 2.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.965 |
| SRR8749028 | MeJA induced 9h | 4.874 |
| SRR8749029 | MeJA induced 9h | 2.047 |
| SRR8749030 | Uninduced | 10.176 |
| SRR8749031 | Uninduced | 6.762 |
| SRR8749032 | Uninduced | 10.418 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.766 |
| SRR8400027 | Control-Root | 6.195 |