Gene detail information of Glyur000104s00006041.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G22220.2 | 3.00E-120 | E2F transcription factor 1 |
| NR | XP_004506214.1 | 0 | PREDICTED: transcription factor E2FB-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q9FV71|E2FB_ARATH | 2.00E-160 | Transcription factor E2FB |
| trEMBL | tr|K7LQ43|K7LQ43_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G18401.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00104 | 341691 | 346884 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | E2F-DP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000104s00006041.1 | PF02319.15 | E2F_TDP | 143 | 208 | 4.40E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.895 |
| SRR1783600 | control | 12.065 |
| SRR1783602 | moderate drought stress | 11.196 |
| SRR1811619 | moderate drought stress | 11.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.543 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.262 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.760 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.574 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.193 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.013 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.754 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.930 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.596 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.740 |
| SRR2967015 | Control (Tissue:root) | 17.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.355 |
| SRR9715740 | Leave | 5.716 |
| SRR9715741 | Leave | 7.394 |
| SRR9715739 | Root | 3.659 |
| SRR9715742 | Root | 10.358 |
| SRR9715743 | Root | 9.569 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.948 |
| SRR8749028 | MeJA induced 9h | 18.225 |
| SRR8749029 | MeJA induced 9h | 19.333 |
| SRR8749030 | Uninduced | 8.657 |
| SRR8749031 | Uninduced | 14.682 |
| SRR8749032 | Uninduced | 16.637 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.973 |
| SRR8400027 | Control-Root | 18.194 |