Gene detail

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Gene detail information of Glyur000104s00006042.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G75660.1	3.00E-170	5'-3' exoribonuclease 3
NR	XP_004506263.1	0	PREDICTED: 5'-3' exoribonuclease 3-like [Cicer arietinum]
Swissprot	tr\|Q9FQ03\|XRN3_ARATH	0	5'-3' exoribonuclease 3
trEMBL	tr\|G7JH90\|G7JH90_MEDTR	0	5'-3' exoribonuclease {ECO:0000313\|EMBL:AES88286.2}

Sequence

Transcript Sequence

>Glyur000104s00006042.1
CAACAAGTTAAGTAATTATATATCTCACGAAATTGTTTCGTTTGCTTCACTAGAAACGTCCTCCTTATTCTCTCGTTAGTTAAGTAATTCTAATTAATTAAACCAGAAGGAGAAGCACAGCAGAGATAGCAGCTATGGGTGTTCTAGCATTTTATGGGTGGCTGGTCAACAAATACCCAAAGATTCTTGAAGACGTTAACACCTCTACCACGCCAAGCGTGGAATATGATAACTTGTATCTAGACATGAACTCCATTATCCACCCATGCTTTAGCCCCGATGATCCCAACAGTTCCACGCCAACAACATTCGACGATGTGTTTAGAAACATCTTTAACTACATTGATATGCTTGTCAGCATGGTTAAGCCTCGCAAGCTCTTGTACTTGGCTATCGATGGAGTAGCCCCACGGGCGAAAATGAACCAACAAAGACGCAGACGTTTCAGATATGCAAAGGATGATGAAATACGAGAAGCTGAGGAAGACAGGCTGAGGAAGCAATTTGAAATGGAAGGCAAACGGGTTCTTCCTAAACAAGAATCTGAAGTGTCAGATTCCAATATGATAACACCAGGCACAGAGTTCATGCACCAACTCTCTAAGGCCCTTAAAAGCTATATCTCTTCAAGGATGGCCTGTGACTCGTTATGGAAGGATATTATGGTGATTCTCTCTGATGCTAATGTTCCTGGAGAAGGGGAACACAAGATTATGTCATTCATAAGGGAACAACGTAGTTTTCCTGATTATGATCCAAACACCAGCCACTGCGTATATGGCCCTGATGCTGATCTTGTAATGCTTGGAATGGCAACCCATGAGCCCCATTTTTCAATATTAAGAGAGGATTTGTTTCAGGAGCAGCAGCAACAAATTGCTGCTAAGCCGTTCAAGCTTTTGCATATTTGGTTGTTGAGGGAATATCTTGAGATTGACATGAAGATAGAATATCCTCCCAAAAATTGCAGCATTGATTTTGAGCGGATAATTGATGATTTTATCTTCATGTGCTTTTTTGCTGGAAATGATTTTCTGCCCCACATGCCATCTTTGGAAATTCGCGAGGGGGCTATTGATTTGCTGATGACTGTTTATAAAAAACAATTCAGTAAAATTGGAGGATATCTTGTGGACATACATAGGATTGGGGAGAAACATGCTGCTTTTGTGAAGCTATCGAGAGTTGAAAAATTCATACTTATGGTTGGTACAAATGAAGATAAAATCTTCAATAAAAGATCCGAAATTAGAGACCGGANATTGAGAAGGCTTATTAATGAATATGAGCATTCAAAGCAGGAAGAACAGAATGTAGCTAGTTACTCAGATCTTGACAATGAAAGTAGTTCTCATTGTGCTCTTCTCATTAAGAAGGCCCCGGCTTCCAAAAATTCGTCACCATTCTTGGTCAATAAGTTTTCTGCTCTGTCTGATGAAGAAATTTTGCGGAACACGAAGGAGTTAAAAGAGGAATTACACAAATGCATTAGGGAGAAATGTGACTTGTTTAAGAGTGGAGAGTTCTTGACTGACAAGATAAAATTGGGAGAAGCTGGATACAAAGAAAGATATTATAAAGAGAAATTTTGTGTGGAGGGCTCCACAGACATCGAGTGCAAAAGGAAAGAAGTAGTCCAAAAGTACACTGAAGGATTGTTGTGGGTTCTTCAGTACTATTTTTCAGGAGTTGCTTCATGGACATGGTTTTATCCTTATCACTATGGTCCATTTGCTTCGGACTTAAAGGGCATGGGTCAGGTGAGAGTAAATTTTGAGAAAGGTGTCCCATTCTTACCTTTTGATCAACTCTTAAGTGTTCTGCCACCAAAGAGTGCTTATGCACTTCCAAAAGCCTATGCACAATTGATGCTGGATGAGCAGTCTGGAATATTTGACTGGTATCCTCATGATTTTGAAATTGATACAGAAGGAAAACGCTTCTCGTGGNAGGTTATCTCGCTCAAGTTCCTTCTTATGATTAGCAAGACTTTTATTATGCGTGCAGTACAAATATATACTGACGGTAACAAATTTTGTGTCTCATTAAGGGAAAGTGAAGCATTGAGAAATTCAGTCAAAGTTGATAGCTTGTTTGTTAGAAACACTTGCAAGTTGGCAGAGAAAATTTGCTACCTTTCACCAGAGTCAAACAAGTTAGATACGAGCATAAGTGATGGCATTGGGGGCATCATAAGTCTTTACCATGAGTGTGTTGAGAAGCAGCCTTGCTTGGGGATGGATAACATTTGTGACAACAGACAAGAAGATTGTGTCGTCAGAAGTGTTTACTACGAGCTGCCTGCTGGAGGTAGCAGTCATATTCCTCATTTACTATCGGGTGTGAACTTTCCACCAAAGACAATCTTTGAATGTGACATAATGGAAACAGTACTCTGGCATGAACAACAGAAATATGGTCGTTTTGATAGGTCGTCGCAGATTCAAGACAATTGGAGGAGTGCAAAGAGTGAGGGAAGTGCTTCAAGGTTTTCCCCAAATGCAACTACTCAACATGGAAGAAGCTTTTCATTAAATCCACCTGCTGCAGTCATTTACAAAGNTGCTGGTGTTGGATGGGGTTCTTCAGGTAGAGGGAGGCAAGCCTATAGTCCCAACATGAATGGAGGATATCATCAGTATCATCAACGTTCGCAATCTGAGACTGTGCCTTTTGGTCGTGNACGAGGTAGGCTTCAACCGAATTCAAATAATGTGAATTCATGGAGGAGTGTTTCTTCTAACAGCAGCTCATTGCGGCCTCAATGGATTGCTACAAAGGACCAAAATCGTTGGTAGAATATTTACCTTCTTGCAGTGGGTGAAATGCAGCTTGATGGTCTTTTTTGTCTGGCCTAGTTGAAATGATCATTTTGGGGTTGGAGCTTAAACACCATTCACTAATTTTGTGTTATTACTCATTTAAGATCATTAAGGCCCTGCATGGGGATGATGTCAACGTGTACTGTTGTGCTGCTTTTATGCTTATTTCATTGTCTTACGCTCGCATTTTGATCAAGTGCTCAAAATGACGTGGAATTGC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00104	348245	354336	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12619	XRN2, RAT1	EC:3.1.13.-	Ribosome biogenesis in eukaryotes	map03008
K12619	XRN2, RAT1	EC:3.1.13.-	RNA degradation	map03018

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0004527 exonuclease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000104s00006042.1	PF03159.13	XRN_N	1	239	1.60E-98

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.795
SRR1783600	control	5.709
SRR1783602	moderate drought stress	3.900
SRR1811619	moderate drought stress	3.798

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.522
DRR006520	Root Summer glycyrrhizin high producing strain	5.393
DRR006521	Root Winter glycyrrhizin high producing strain	0.281
DRR006522	Root Winter glycyrrhizin high producing strain	0.261
DRR006523	Root Summer glycyrrhizin low producing strain	6.352
DRR006524	Root Summer glycyrrhizin low producing strain	6.457
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.525
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.551

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.950
SRR2868004	Drought Stress(Tissue:root)	0.440
SRR2967015	Control (Tissue:root)	0.558

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.745
SRR9715740	Leave	0.602
SRR9715741	Leave	1.002
SRR9715739	Root	0.272
SRR9715742	Root	5.738
SRR9715743	Root	4.808

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.126
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.020
SRR8749030	Uninduced	0.015
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.009

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.076
SRR8400027	Control-Root	1.371