Gene detail

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Gene detail information of Glyur000105s00014180.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72770.3	2.00E-136	homology to ABI1
NR	XP_004498842.1	0	PREDICTED: protein phosphatase 2C 16-like isoform X1 [Cicer arietinum]
COG	YP_001089095.1	7.00E-07	phosphatase [Clostridium difficile 630]
Swissprot	tr\|Q9CAJ0\|P2C16_ARATH	3.00E-167	Protein phosphatase 2C 16 (Precursor)
trEMBL	tr\|G7I8Z3\|G7I8Z3_MEDTR	0	Protein phosphatase 2C family protein {ECO:0000313\|EMBL:AES59163.1}

Sequence

Transcript Sequence

>Glyur000105s00014180.1
CACTCACCCAACTCAACACACTCTTTTTTATATTGTCCCTTTCTCTTTTCAAAGGCATTTTCTCACCTATAAAATTTTCACATTAATAATAATAATAATAAAAAATATAAAAAATTTCTATAGGCCATCTTTCTCATCTTTCCTACTCTCCTCCCATTCTTGCGCTTCCAATTCTAAACACCCACTNACCCATCCACACCACACTCAGGTGTCAAAGTGAGAAGAAGGAACAGGAGAGAGAAAAAAGGGAGTGGGAAGGGAAGGAACCAGAGACCCTACACCGTTGACAAAAAAATTAGTAATAATTACTACTAGACAGAGAGAGCGCCTGTGATGCGTTGCCTCAGATCCAGGCAACTCATGGTGGTATGTGGAAAAAAGCTGTTTAACTCTCACTAAGAGTTGACACAAAGGTAGATAGAGCCTAGAGGAGAGTTCAGAAAAGAAGTTGGTTATGCTTGAAAAAGGGGCTCCTTAGGAATGGAAAATGGCACCCTTCACATTCTAAGATCCTTTTCAATCAGAAAAGCAGGTGATCAATTAGTTGAAATATGACAGGTTTTGTGATACCAGAGGGGTGGGAGGGTAACTTTTTGTCCAACCTAGATAAGGATTTCAATGGAGGAGGTGTTGTTTGTGGNTACAGTTGCATTAAGAGTAGGTAACTCAGCCTGTGACAACTCAACCATAGCTACCCCCCACATGGATGTATCCAGATTTAAGCTGATGGCAGATGCAGGGTCGTTATCTAATTCTGTAACTAAGGTTTCCACTGAGACGGTTACAGGTTCCAACAACAATGGTCATAATGGTAGCAATTTGGAGGATGGAGTTGGTGTTACAGAAGTCACGCCANCGGAACCAGATAGGGAAGAAGGAAGTCCTTTGTTGGATATGATATCCCAAAATAAAAGCACTTTGGTTGCCGGCGATNCAGCTTTAACCCCAGAAATTGAGGAGGATGATTCATTATCATTGGAAGGTGACCAATTCATTGATAGTTCATGTTCTCTCTCANTTGTCAGTGAGAACAGTAGTGTAGGTGTAGAGGAGTTCATCAGTTCTGATGCTACTTCAGAAGTTGGGACACCATGTTCCATAGATATAGAGAAGAGCATCGGTCCTGTCAATATTGTTGTTGCTCCGGCTGTTGATTTGGGGGAGTCAAATGTTGACACAGATGTTATGAGTGAACCCCTTGCTGTGGAAGTGAGCCTTGACAAAGAGACTGGAGTTGGATCTGATGTAAAGCCTTCTACAGTTGTTCTTCATCAGCTGCCTCAGGAAGGGGGAGTGGGTGTAACAGTTGGTCGGAGTGTTTTCGAGTTGGATTATACCCCACTCTGGGGATTCATATCCCTGTGTGGAAGANGACCTNAAATGGAAGATGCAGTTGCAACTGTTCCTCGATTTTTGAAAATTCCTATTCAAATGCTAATTGGCGATCGGATACCTGATGGAATAAACAAGTGTTTTACTCTCCAGATGACCCATTTTTTTGGAGTCTATGATGGCCATGGGGGCTCTCAGGTGGCAAATTATTGTCGTGAACGTATCCACATGGCCTTGGCTGAGGAAATTGAATTTGTCAAGGAAGGTCTAATTAGTGAAAGTATCAAGGATGGTTGTCAAGATCAGTGGAAAAAAGCTTTCACCAATTGTTTCTTAAAGGTTGATGCTGAAGTTGGAGGAAAAGTTAATGATGAACCTGTTGCCCCAGAAACTGTTGGNTCCACTGCTGTTGTTGCTCTTATCTGTTCATCTCATATCGTAGTCGCAAATTGTGGTGATTCAAGAGCGGTTCTATGTCGTGGCAAAGAACCCATAGCATTATCNGTGGACCATAAACCAAACCGAGATGATGAATATGCAAGAATTGAAGCAGCTGGAGGAAAGGTGATACAGTGGAATGGCCATCGTGTGTTTGGTGTTCTTGCAATGTCAAGGTCTATTGGTGATAGATATTTGAAACCATGGATTATTCCGGAACCAGAAGTTCGGTTTCTTCCGCGTGCGAAAGATGACGAGTGTCTCATTCTGGCCAGTGATGGTCTGTGGGATGTGATGACGAATGAAGAGGTGTGTGACCTGGCNCGAAAACGAATACTCCTCTGGTACAAGAAAAACGGGTTGGAACTACCCTCAGAAAGGGGAGAAGGGATTGATCCTGCCGCACAAGCTGCAGCAGAGTTCCTATCAAACCGCGCACTTCAGAAAGGCAGCAAAGATAACATCACCGTGATTGTTGTCGATTTGAAACCGCAGCGAAAATACAAGAGCAAAACATGATGATTTCAAGTGCACTTGGTTGTTTGAAGATTGTTATTGTACGATAGAAGCATAATATAATCCAATATAGTTTTTGCCCTTTAATTTTTCACCAGGGCATCATCCTCTTTGGTCTAATAGCACTTGTGTACTATAATACATCTTACCTAGAACTCAACTAATTAAAGAGTCTCTCCTTGTTCATTGTGCTGCATTGGAGCTATGTAAATCTTAGCTTCTTGTTATTATAGGGACATATAGGAGACTAGTTTCCACCATGCCCTNTGACATCTTTTCAGCATATTGTATTCATTATTATGCCTCCGAGTACAAAGGCTCTGTGAGGC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00105	83238	88411	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14497	PP2C	EC:3.1.3.16	MAPK signaling pathway - plant	map04016
			Plant hormone signal transduction	map04075
			Insulin resistance	map04931

Gene Ontology

biological_process
GO:0006470 protein dephosphorylation

molecular_function GO:0003824 catalytic activity GO:0004722 protein serine/threonine phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000105s00014180.1	PF00481.16	PP2C	277	539	1.90E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.092
SRR1783600	control	19.474
SRR1783602	moderate drought stress	19.447
SRR1811619	moderate drought stress	19.337

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.279
DRR006520	Root Summer glycyrrhizin high producing strain	27.984
DRR006521	Root Winter glycyrrhizin high producing strain	6.523
DRR006522	Root Winter glycyrrhizin high producing strain	5.983
DRR006523	Root Summer glycyrrhizin low producing strain	32.544
DRR006524	Root Summer glycyrrhizin low producing strain	33.697
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.462
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.036

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	52.138
SRR2868004	Drought Stress(Tissue:root)	62.842
SRR2967015	Control (Tissue:root)	65.332

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	45.810
SRR9715740	Leave	57.276
SRR9715741	Leave	49.518
SRR9715739	Root	13.291
SRR9715742	Root	26.278
SRR9715743	Root	25.079

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.584
SRR8749028	MeJA induced 9h	15.651
SRR8749029	MeJA induced 9h	8.603
SRR8749030	Uninduced	6.967
SRR8749031	Uninduced	3.259
SRR8749032	Uninduced	3.822

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	48.656
SRR8400027	Control-Root	45.988