Gene detail information of Glyur000105s00014186.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G20510.11.00E-59alfin-like 5
NRXP_002324777.11.14E-108PHD finger family protein [Populus trichocarpa]
Swissprottr|Q5XEM9|ALFL5_ARATH2.00E-89PHD finger protein ALFIN-LIKE 5, N-terminally processed
trEMBLtr|B9IKC9|B9IKC9_POPTR4.00E-109PHD finger family protein {ECO:0000313|EMBL:EEF03342.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00105111524116494-


Gene family

Gene familysubfamily
Transcription Factors FamilyAlfin-like


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0042393  histone binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000105s00014186.1PF12165.3DUF3594111005.10E-53
Glyur000105s00014186.1PF00628.24PHD1612102.70E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control21.536
SRR1783600control21.105
SRR1783602moderate drought stress40.779
SRR1811619moderate drought stress39.627

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain32.425
DRR006520Root Summer glycyrrhizin high producing strain31.744
DRR006521Root Winter glycyrrhizin high producing strain6.543
DRR006522Root Winter glycyrrhizin high producing strain6.299
DRR006523Root Summer glycyrrhizin low producing strain51.435
DRR006524Root Summer glycyrrhizin low producing strain51.034
DRR006525Leaf Summer glycyrrhizin high producing strain6.732
DRR006526Leaf Summer glycyrrhizin high producing strain7.076

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)24.475
SRR2868004Drought Stress(Tissue:root)19.467
SRR2967015Control (Tissue:root)30.247

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.891
SRR9715740Leave18.075
SRR9715741Leave15.553
SRR9715739Root17.308
SRR9715742Root19.125
SRR9715743Root16.904

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h36.327
SRR8749028MeJA induced 9h19.287
SRR8749029MeJA induced 9h28.037
SRR8749030Uninduced10.508
SRR8749031Uninduced6.252
SRR8749032Uninduced6.655

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root37.069
SRR8400027Control-Root35.956

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved