Gene detail information of Glyur000105s00014209.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G03010.1 | 0 | Phototropic-responsive NPH3 family protein |
| NR | XP_007144554.1 | 0 | hypothetical protein PHAVU_007G165600g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SA69|Y1301_ARATH | 0 | BTB/POZ domain-containing protein At1g03010 |
| trEMBL | tr|V7BI25|V7BI25_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW16548.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00105 | 319071 | 323653 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | BTB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000105s00014209.1 | PF00651.26 | BTB | 38 | 139 | 8.20E-06 |
| Glyur000105s00014209.1 | PF03000.9 | NPH3 | 213 | 483 | 2.70E-91 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 39.078 |
| SRR1783600 | control | 39.327 |
| SRR1783602 | moderate drought stress | 30.096 |
| SRR1811619 | moderate drought stress | 29.758 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.150 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.709 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.615 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.562 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.889 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.815 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.513 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.512 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 17.396 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.999 |
| SRR2967015 | Control (Tissue:root) | 14.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.155 |
| SRR9715740 | Leave | 3.056 |
| SRR9715741 | Leave | 2.384 |
| SRR9715739 | Root | 4.895 |
| SRR9715742 | Root | 6.049 |
| SRR9715743 | Root | 5.689 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.109 |
| SRR8749028 | MeJA induced 9h | 0.053 |
| SRR8749029 | MeJA induced 9h | 0.134 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 22.584 |
| SRR8400027 | Control-Root | 20.173 |