Gene detail information of Glyur000106s00011714.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G04240.1 | 0 | Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein |
| NR | XP_006606254.1 | 0 | PREDICTED: probable lysine-specific demethylase ELF6-like isoform X1 [Glycine max] |
| Swissprot | tr|Q6BDA0|ELF6_ARATH | 0 | Probable lysine-specific demethylase ELF6 |
| trEMBL | tr|I1NHH0|I1NHH0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G32160.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00106 | 77339 | 86116 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000106s00011714.1 | PF02375.12 | JmjN | 17 | 50 | 1.40E-14 |
| Glyur000106s00011714.1 | PF02373.17 | JmjC | 321 | 440 | 1.60E-35 |
| Glyur000106s00011714.1 | PF13465.1 | zf-H2C2_2 | 1476 | 1491 | 0.00019 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.504 |
| SRR1783600 | control | 5.500 |
| SRR1783602 | moderate drought stress | 5.557 |
| SRR1811619 | moderate drought stress | 5.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.108 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.076 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.002 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.927 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.913 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.892 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.627 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.761 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.588 |
| SRR2967015 | Control (Tissue:root) | 10.837 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.816 |
| SRR9715740 | Leave | 8.107 |
| SRR9715741 | Leave | 8.302 |
| SRR9715739 | Root | 1.180 |
| SRR9715742 | Root | 5.848 |
| SRR9715743 | Root | 5.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.386 |
| SRR8749028 | MeJA induced 9h | 6.179 |
| SRR8749029 | MeJA induced 9h | 3.983 |
| SRR8749030 | Uninduced | 3.836 |
| SRR8749031 | Uninduced | 2.491 |
| SRR8749032 | Uninduced | 1.922 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.014 |
| SRR8400027 | Control-Root | 9.437 |