Gene detail information of Glyur000106s00011717.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G53260.10phenylalanine ammonia-lyase 2
NRNP_001266106.10phenylalanine ammonia-lyase 2 [Cicer arietinum]
COGYP_007127054.17.00E-85histidine ammonia-lyase [Gloeocapsa sp. PCC 7428]
Swissprottr|Q9SMK9|PAL2_CICAR0Phenylalanine ammonia-lyase 2
trEMBLtr|K7N485|K7N485_SOYBN0Phenylalanine ammonia-lyase {ECO:0000256|RuleBase:RU003955}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001069429299867-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10775PAL EC:4.3.1.24 Phenylalanine metabolism map00360
Phenylpropanoid biosynthesismap00940


Gene Ontology

biological_process

GO:0006559  L-phenylalanine catabolic process

GO:0009058  biosynthetic process


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0003824  catalytic activity

GO:0016841  ammonia-lyase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000106s00011717.1PF00221.14Lyase_aromatic685576.50E-173


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control42.997
SRR1783600control43.058
SRR1783602moderate drought stress42.781
SRR1811619moderate drought stress43.010

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.141
DRR006520Root Summer glycyrrhizin high producing strain16.151
DRR006521Root Winter glycyrrhizin high producing strain0.277
DRR006522Root Winter glycyrrhizin high producing strain0.323
DRR006523Root Summer glycyrrhizin low producing strain17.284
DRR006524Root Summer glycyrrhizin low producing strain17.079
DRR006525Leaf Summer glycyrrhizin high producing strain29.724
DRR006526Leaf Summer glycyrrhizin high producing strain29.618

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)119.743
SRR2868004Drought Stress(Tissue:root)180.039
SRR2967015Control (Tissue:root)190.325

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave49.565
SRR9715740Leave47.681
SRR9715741Leave33.503
SRR9715739Root117.316
SRR9715742Root70.708
SRR9715743Root81.974

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h38.665
SRR8749028MeJA induced 9h233.196
SRR8749029MeJA induced 9h22.468
SRR8749030Uninduced358.737
SRR8749031Uninduced144.811
SRR8749032Uninduced74.267

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root167.946
SRR8400027Control-Root116.226

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved