Gene detail information of Glyur000106s00011721.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G38970.10Zinc finger (C3HC4-type RING finger) family protein
NRAES62132.20zinc finger, C3HC4 type (RING finger) protein [Medicago truncatula]
COGYP_007132536.12.00E-23von Willebrand factor type A [Stanieria cyanosphaera PCC 7437]
trEMBLtr|G7I519|G7I519_MEDTR0Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AES62132.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00106131634135684+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000106s00011721.1PF13639.1zf-RING_2791246.60E-10
Glyur000106s00011721.1PF13519.1VWA_22814651.40E-23
Glyur000106s00011721.1PF14624.1Vwaint6307024.40E-21


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control44.814
SRR1783600control45.302
SRR1783602moderate drought stress41.099
SRR1811619moderate drought stress41.106

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain36.800
DRR006520Root Summer glycyrrhizin high producing strain35.992
DRR006521Root Winter glycyrrhizin high producing strain6.927
DRR006522Root Winter glycyrrhizin high producing strain7.161
DRR006523Root Summer glycyrrhizin low producing strain36.405
DRR006524Root Summer glycyrrhizin low producing strain35.956
DRR006525Leaf Summer glycyrrhizin high producing strain20.331
DRR006526Leaf Summer glycyrrhizin high producing strain20.353

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)50.076
SRR2868004Drought Stress(Tissue:root)56.080
SRR2967015Control (Tissue:root)62.115

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.367
SRR9715740Leave17.086
SRR9715741Leave30.902
SRR9715739Root42.189
SRR9715742Root69.503
SRR9715743Root68.696

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h54.176
SRR8749028MeJA induced 9h66.236
SRR8749029MeJA induced 9h28.671
SRR8749030Uninduced33.742
SRR8749031Uninduced26.293
SRR8749032Uninduced18.173

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root44.218
SRR8400027Control-Root45.963

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved