Gene detail information of Glyur000106s00011728.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G54810.22.00E-35Plant-specific GATA-type zinc finger transcription factor family protein
NRXP_007143712.10hypothetical protein PHAVU_007G095300g [Phaseolus vulgaris]
Swissprottr|O82632|GATA9_ARATH1.00E-41GATA transcription factor 9
trEMBLtr|V7BGX1|V7BGX1_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW15706.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00106181318185014+


Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0008270  zinc ion binding

GO:0043565  sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000106s00011728.1PF00320.22GATA3093424.10E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control33.245
SRR1783600control33.794
SRR1783602moderate drought stress60.415
SRR1811619moderate drought stress59.695

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain142.872
DRR006520Root Summer glycyrrhizin high producing strain142.813
DRR006521Root Winter glycyrrhizin high producing strain34.463
DRR006522Root Winter glycyrrhizin high producing strain33.765
DRR006523Root Summer glycyrrhizin low producing strain369.658
DRR006524Root Summer glycyrrhizin low producing strain371.198
DRR006525Leaf Summer glycyrrhizin high producing strain37.324
DRR006526Leaf Summer glycyrrhizin high producing strain37.767

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)60.553
SRR2868004Drought Stress(Tissue:root)46.768
SRR2967015Control (Tissue:root)55.634

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave165.882
SRR9715740Leave120.608
SRR9715741Leave130.893
SRR9715739Root281.186
SRR9715742Root433.665
SRR9715743Root379.122

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h208.488
SRR8749028MeJA induced 9h195.967
SRR8749029MeJA induced 9h211.076
SRR8749030Uninduced202.855
SRR8749031Uninduced69.888
SRR8749032Uninduced137.124

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root45.065
SRR8400027Control-Root112.275

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved