Gene detail information of Glyur000106s00011744.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G48850.10chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative
NRXP_004496285.10PREDICTED: chorismate synthase, chloroplastic-like isoform X1 [Cicer arietinum]
COGYP_003890271.14.00E-176chorismate synthase [Cyanothece sp. PCC 7822]
Swissprottr|P57720|AROC_ARATH0Chorismate synthase, chloroplastic (Precursor)
trEMBLtr|G7I3B2|G7I3B2_MEDTR0Chorismate synthase {ECO:0000256|RuleBase:RU000605}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00106306849314559-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01736aroC EC:4.2.3.5 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400


Gene Ontology

biological_process

GO:0009073  aromatic amino acid family biosynthetic process


molecular_function

GO:0004107  chorismate synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000106s00011744.1PF01264.16Chorismate_synt584054.50E-141


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control65.716
SRR1783600control65.742
SRR1783602moderate drought stress53.291
SRR1811619moderate drought stress53.376

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain71.442
DRR006520Root Summer glycyrrhizin high producing strain70.611
DRR006521Root Winter glycyrrhizin high producing strain67.473
DRR006522Root Winter glycyrrhizin high producing strain65.213
DRR006523Root Summer glycyrrhizin low producing strain57.704
DRR006524Root Summer glycyrrhizin low producing strain58.555
DRR006525Leaf Summer glycyrrhizin high producing strain51.665
DRR006526Leaf Summer glycyrrhizin high producing strain51.175

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)146.676
SRR2868004Drought Stress(Tissue:root)156.172
SRR2967015Control (Tissue:root)139.665

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave91.994
SRR9715740Leave74.821
SRR9715741Leave102.794
SRR9715739Root50.746
SRR9715742Root80.562
SRR9715743Root79.486

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h75.213
SRR8749028MeJA induced 9h86.327
SRR8749029MeJA induced 9h62.495
SRR8749030Uninduced170.594
SRR8749031Uninduced145.348
SRR8749032Uninduced83.241

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root129.421
SRR8400027Control-Root119.296

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved