Gene detail information of Glyur000107s00007244.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G20510.12.00E-85alfin-like 5
NRKDP34051.11.45E-151hypothetical protein JCGZ_07622 [Jatropha curcas]
Swissprottr|Q5XEM9|ALFL5_ARATH1.00E-122PHD finger protein ALFIN-LIKE 5, N-terminally processed
trEMBLtr|A0A067KCV1|A0A067KCV1_JATCU5.00E-152Uncharacterized protein {ECO:0000313|EMBL:KDP34051.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00107153223156808+


Gene family

Gene familysubfamily
Transcription Factors FamilyAlfin-like


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0042393  histone binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000107s00007244.1PF12165.3DUF3594101465.50E-83
Glyur000107s00007244.1PF00628.24PHD2002492.00E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control35.159
SRR1783600control35.127
SRR1783602moderate drought stress55.044
SRR1811619moderate drought stress56.999

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain42.200
DRR006520Root Summer glycyrrhizin high producing strain40.885
DRR006521Root Winter glycyrrhizin high producing strain21.835
DRR006522Root Winter glycyrrhizin high producing strain21.163
DRR006523Root Summer glycyrrhizin low producing strain58.425
DRR006524Root Summer glycyrrhizin low producing strain58.263
DRR006525Leaf Summer glycyrrhizin high producing strain15.811
DRR006526Leaf Summer glycyrrhizin high producing strain15.984

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)52.800
SRR2868004Drought Stress(Tissue:root)51.803
SRR2967015Control (Tissue:root)55.259

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.495
SRR9715740Leave32.640
SRR9715741Leave25.670
SRR9715739Root26.391
SRR9715742Root33.682
SRR9715743Root32.050

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h87.338
SRR8749028MeJA induced 9h53.900
SRR8749029MeJA induced 9h69.542
SRR8749030Uninduced28.279
SRR8749031Uninduced23.360
SRR8749032Uninduced26.231

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root60.671
SRR8400027Control-Root67.100

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved