Gene detail information of Glyur000108s00010409.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G26560.10ATP-dependent RNA helicase, putative
NRXP_004498154.10PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like isoform X1 [Cicer arietinum]
COGYP_113939.16.00E-136ATP-dependent helicase HrpA [Methylococcus capsulatus str. Bath]
Swissprottr|Q38953|DHX8_ARATH0Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBLtr|A0A067KY08|A0A067KY08_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP36699.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001084169847902-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12818DHX8, PRP22 EC:3.6.4.13 Spliceosome map03040


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0004386  helicase activity

GO:0005524  ATP binding

GO:0008026  ATP-dependent helicase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000108s00010409.1PF00575.18S12753364.50E-13
Glyur000108s00010409.1PF00270.24DEAD5837331.00E-07
Glyur000108s00010409.1PF00271.26Helicase_C8209073.00E-11
Glyur000108s00010409.1PF04408.18HA296910581.40E-28
Glyur000108s00010409.1PF07717.11OB_NTP_bind109311915.50E-31


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control23.213
SRR1783600control23.508
SRR1783602moderate drought stress25.500
SRR1811619moderate drought stress25.161

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.717
DRR006520Root Summer glycyrrhizin high producing strain21.434
DRR006521Root Winter glycyrrhizin high producing strain21.834
DRR006522Root Winter glycyrrhizin high producing strain21.160
DRR006523Root Summer glycyrrhizin low producing strain21.928
DRR006524Root Summer glycyrrhizin low producing strain21.888
DRR006525Leaf Summer glycyrrhizin high producing strain11.887
DRR006526Leaf Summer glycyrrhizin high producing strain11.949

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)28.053
SRR2868004Drought Stress(Tissue:root)33.109
SRR2967015Control (Tissue:root)32.319

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.650
SRR9715740Leave13.706
SRR9715741Leave19.810
SRR9715739Root8.879
SRR9715742Root32.573
SRR9715743Root27.439

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.018
SRR8749028MeJA induced 9h26.145
SRR8749029MeJA induced 9h14.297
SRR8749030Uninduced12.397
SRR8749031Uninduced17.519
SRR8749032Uninduced13.411

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.500
SRR8400027Control-Root28.983

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved