Gene detail information of Glyur000108s00010410.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G67240.17.00E-116small RNA degrading nuclease 3
NRAFK41173.10unknown [Lotus japonicus]
COGYP_001568509.16.00E-06DNA polymerase III PolC [Petrotoga mobilis SJ95]
Swissprottr|Q8RXK2|SDN3_ARATH3.00E-135Small RNA degrading nuclease 3
trEMBLtr|I3SLN1|I3SLN1_LOTJA0Uncharacterized protein {ECO:0000313|EMBL:AFK41173.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001085051055642-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14570REX1, REXO1, RNH70 EC:3.1.-.- Ribosome biogenesis in eukaryotes map03008


Gene Ontology

molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding

GO:0004527  exonuclease activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000108s00010410.1PF00929.19RNase_T1463068.40E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.937
SRR1783600control11.023
SRR1783602moderate drought stress11.773
SRR1811619moderate drought stress11.595

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.722
DRR006520Root Summer glycyrrhizin high producing strain12.587
DRR006521Root Winter glycyrrhizin high producing strain9.591
DRR006522Root Winter glycyrrhizin high producing strain9.628
DRR006523Root Summer glycyrrhizin low producing strain13.937
DRR006524Root Summer glycyrrhizin low producing strain14.133
DRR006525Leaf Summer glycyrrhizin high producing strain6.895
DRR006526Leaf Summer glycyrrhizin high producing strain6.961

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)25.051
SRR2868004Drought Stress(Tissue:root)19.304
SRR2967015Control (Tissue:root)16.405

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.927
SRR9715740Leave14.813
SRR9715741Leave8.857
SRR9715739Root1.153
SRR9715742Root9.624
SRR9715743Root8.149

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h83.621
SRR8749028MeJA induced 9h33.972
SRR8749029MeJA induced 9h40.915
SRR8749030Uninduced8.482
SRR8749031Uninduced7.015
SRR8749032Uninduced6.354

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.497
SRR8400027Control-Root22.541

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved