Gene detail information of Glyur000108s00010420.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G16310.10LSD1-like 3
NRXP_004499218.10PREDICTED: uncharacterized protein LOC101504496 isoform X1 [Cicer arietinum]
COGYP_007109585.19.00E-62amine oxidase [Geitlerinema sp. PCC 7407]
Swissprottr|F4JLS1|LDL3_ARATH0Lysine-specific histone demethylase 1 homolog 3
trEMBLtr|G7I5Y4|G7I5Y4_MEDTR0Polyamine oxidase {ECO:0000313|EMBL:AES59624.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00108154952165612+


Gene family

Gene familysubfamily
Transcription Factors FamilySWI/SNF-SWI3


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006351  transcription, DNA-templated

GO:0055114  oxidation-reduction process


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding

GO:0016491  oxidoreductase activity

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000108s00010420.1PF04433.12SWIRM5936827.90E-11
Glyur000108s00010420.1PF01593.19Amino_oxidase85713271.20E-104


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.828
SRR1783600control7.897
SRR1783602moderate drought stress8.509
SRR1811619moderate drought stress8.400

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.162
DRR006520Root Summer glycyrrhizin high producing strain9.998
DRR006521Root Winter glycyrrhizin high producing strain8.482
DRR006522Root Winter glycyrrhizin high producing strain8.179
DRR006523Root Summer glycyrrhizin low producing strain10.777
DRR006524Root Summer glycyrrhizin low producing strain10.812
DRR006525Leaf Summer glycyrrhizin high producing strain5.984
DRR006526Leaf Summer glycyrrhizin high producing strain5.917

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.658
SRR2868004Drought Stress(Tissue:root)18.376
SRR2967015Control (Tissue:root)18.337

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.093
SRR9715740Leave10.653
SRR9715741Leave11.502
SRR9715739Root1.484
SRR9715742Root15.124
SRR9715743Root13.785

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.696
SRR8749028MeJA induced 9h17.476
SRR8749029MeJA induced 9h12.716
SRR8749030Uninduced14.079
SRR8749031Uninduced17.426
SRR8749032Uninduced11.752

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.532
SRR8400027Control-Root16.533

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved