Gene detail information of Glyur000108s00010421.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G21710.10DNA-directed RNA polymerase family protein
NRXP_004499217.10PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cicer arietinum]
COGYP_004457932.10RNA polymerase subunit B [Acidianus hospitalis W1]
Swissprottr|Q42877|RPB2_SOLLC0DNA-directed RNA polymerase II subunit RPB2
trEMBLtr|V7BQ99|V7BQ99_PHAVU0DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU000431}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00108167049175946-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03010RPB2, POLR2B EC:2.7.7.6 Purine metabolism map00230
Pyrimidine metabolismmap00240
RNA polymerasemap03020
Huntington's diseasemap05016
Epstein-Barr virus infectionmap05169


Gene Ontology

biological_process

GO:0006351  transcription, DNA-templated


molecular_function

GO:0003677  DNA binding

GO:0003899  DNA-directed RNA polymerase activity

GO:0032549  ribonucleoside binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000108s00010421.1PF04563.10RNA_pol_Rpb2_1424455.20E-71
Glyur000108s00010421.1PF04561.9RNA_pol_Rpb2_21973882.90E-57
Glyur000108s00010421.1PF04565.11RNA_pol_Rpb2_34615261.30E-24
Glyur000108s00010421.1PF04566.8RNA_pol_Rpb2_45606211.70E-25
Glyur000108s00010421.1PF04567.12RNA_pol_Rpb2_56466974.60E-20
Glyur000108s00010421.1PF00562.23RNA_pol_Rpb2_670310741.50E-125
Glyur000108s00010421.1PF04560.15RNA_pol_Rpb2_7107611121.50E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control46.872
SRR1783600control46.883
SRR1783602moderate drought stress105.043
SRR1811619moderate drought stress102.928

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain58.234
DRR006520Root Summer glycyrrhizin high producing strain58.368
DRR006521Root Winter glycyrrhizin high producing strain58.810
DRR006522Root Winter glycyrrhizin high producing strain56.729
DRR006523Root Summer glycyrrhizin low producing strain64.633
DRR006524Root Summer glycyrrhizin low producing strain64.469
DRR006525Leaf Summer glycyrrhizin high producing strain29.314
DRR006526Leaf Summer glycyrrhizin high producing strain29.296

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)58.518
SRR2868004Drought Stress(Tissue:root)63.475
SRR2967015Control (Tissue:root)70.266

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave41.333
SRR9715740Leave45.989
SRR9715741Leave63.436
SRR9715739Root9.849
SRR9715742Root81.892
SRR9715743Root68.257

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h62.852
SRR8749028MeJA induced 9h62.886
SRR8749029MeJA induced 9h46.807
SRR8749030Uninduced30.830
SRR8749031Uninduced39.253
SRR8749032Uninduced35.748

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root66.604
SRR8400027Control-Root64.489

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved