Gene detail information of Glyur000108s00010426.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G75540.1 | 3.00E-47 | salt tolerance homolog2 |
| NR | AFK40864.1 | 5.48E-100 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9LQZ7|BBX21_ARATH | 5.00E-64 | B-box zinc finger protein 21 {ECO:0000303|PubMed:19920209} |
| trEMBL | tr|I3SKS2|I3SKS2_LOTJA | 2.00E-100 | Uncharacterized protein {ECO:0000313|EMBL:AFK40864.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00108 | 197315 | 199148 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Orphans |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000108s00010426.1 | PF00643.19 | zf-B_box | 4 | 43 | 1.10E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.990 |
| SRR1783600 | control | 18.752 |
| SRR1783602 | moderate drought stress | 27.868 |
| SRR1811619 | moderate drought stress | 27.960 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.407 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.750 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.885 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.684 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.538 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.315 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.502 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 18.877 |
| SRR2868004 | Drought Stress(Tissue:root) | 25.587 |
| SRR2967015 | Control (Tissue:root) | 41.653 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.018 |
| SRR9715740 | Leave | 1.830 |
| SRR9715741 | Leave | 2.580 |
| SRR9715739 | Root | 8.265 |
| SRR9715742 | Root | 10.738 |
| SRR9715743 | Root | 10.474 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.274 |
| SRR8749028 | MeJA induced 9h | 11.115 |
| SRR8749029 | MeJA induced 9h | 11.206 |
| SRR8749030 | Uninduced | 8.585 |
| SRR8749031 | Uninduced | 3.627 |
| SRR8749032 | Uninduced | 3.685 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.562 |
| SRR8400027 | Control-Root | 15.009 |