Gene detail information of Glyur000108s00010437.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G45130.1 | 0 | beta-galactosidase 5 |
| NR | NP_001265904.1 | 0 | beta-galactosidase 5-like precursor [Cicer arietinum] |
| COG | YP_003380010.1 | 1.00E-50 | beta-galactosidase [Kribbella flavida DSM 17836] |
| Swissprot | tr|Q9MAJ7|BGAL5_ARATH | 0 | Beta-galactosidase 5 (Precursor) |
| trEMBL | tr|Q9ZRV9|Q9ZRV9_CICAR | 0 | Beta-galactosidase {ECO:0000256|RuleBase:RU000675} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00108 | 286049 | 292673 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH35 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000108s00010437.1 | PF01301.14 | Glyco_hydro_35 | 35 | 327 | 6.50E-111 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.504 |
| SRR1783600 | control | 6.499 |
| SRR1783602 | moderate drought stress | 4.627 |
| SRR1811619 | moderate drought stress | 4.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.007 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.305 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.756 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.615 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.679 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.728 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.913 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 97.050 |
| SRR2868004 | Drought Stress(Tissue:root) | 52.233 |
| SRR2967015 | Control (Tissue:root) | 46.411 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.423 |
| SRR9715740 | Leave | 3.048 |
| SRR9715741 | Leave | 10.308 |
| SRR9715739 | Root | 2.964 |
| SRR9715742 | Root | 9.109 |
| SRR9715743 | Root | 5.990 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.720 |
| SRR8749028 | MeJA induced 9h | 1.705 |
| SRR8749029 | MeJA induced 9h | 4.371 |
| SRR8749030 | Uninduced | 6.240 |
| SRR8749031 | Uninduced | 14.641 |
| SRR8749032 | Uninduced | 2.673 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 26.101 |
| SRR8400027 | Control-Root | 20.137 |