Gene detail

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Gene detail information of Glyur000109s00010627.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G54320.1	9.00E-71	Integrase-type DNA-binding superfamily protein
NR	KHN11587.1	0	Ethylene-responsive transcription factor WRI1 [Glycine soja]
Swissprot	tr\|Q6X5Y6\|WRI1_ARATH	1.00E-86	Ethylene-responsive transcription factor WRI1
trEMBL	tr\|K7LFS2\|K7LFS2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G37540.2}

Sequence

Transcript Sequence

>Glyur000109s00010627.1
ATGGCAATGATGATGGAAAATGGAGTGAGCCTGGGAATTGGGAGGAGTGTGTCCATGGAAGAAAGTGAGCTAAAAGGAGCACGTTGTGTCAAGAGACGACGAAGAGAGCATAGCGATGATAACCATAACCAGAAGCATCTGCCACAGCAACAAGTTNGTCAAAATAATTCTACAACTAACAACACTTCAAAGAGAAGCTCAAGATTTCGTGGTGTCAGCAGGCACAGATGGACAGGTAGATTTGAAGCTCACTTATGGGACAAGCTCTCTTGGAACATAACACAAAAGAAGAAAGGGAAGCAAGGGGCTTATGATGAAGAAGAATCTGCTGCCAGAGCATATGATTTAGCTGCACTTAAGTATTGGGGAAAGTCAACTTTCACCAATTTTCCGATATCAGATTACGAGAAAGAGATAGAAATAATGCAGATTATGACCAAAGAGGAGTACTTGGCCACTTTAAGAAGAAAGAGCAGTGGCTTTTCAAGAGGAGTCTCAAAGTATAGAGGTGTTGCAAGGCACCATCATAATGGTAGATGGGAAGCAAGGATAGGGAGGGTTTTTGGAAACAAATATCTCTACCTTGGCACCTATAGTACCCAAGAGGAAGCTGCACGTGCTTATGACATAGCCGCCATTGAGTACAGAGGCATTCATGCTGTAACCAACTTTGATTTGAGTACTTACATAAAATGGTTAAAGNCAGAAAGAGGAATTACCCCAGAAGCAAAAGTTGAACCAAATAATGCACTACCAGAGTCTCAAACAGTGGCATCCCCATCTAACTGTACTCTAATGGAAGAGTCAAAGCCTTTGGCCTTTCACAACAGCCTTTTCAGTCCACATTACCTGAATTCCCCTGAAAAGCAACAAGTACTTGGAAACAGAACCTACCAATTCTCAAGCNATAAGTCATCTTCTCCCACTGCACTTGGCCTTCTTCTCCGCTCTTCNTTATTTAGAGAATTACTTGAAAAGAATTCAAGTGTATGTGAGGATGAAACTGATGGGGATGTTACAAAGGAGCAACAGNAACAGACAGCTAGTGATGATGAGCTGGGTGAAATCTTCTATGATGGCATTGGCAATATCCCATTTAACTTTGATCCCAACAGATGCAACTTGGAATTGCAAGAACGAGACCTGCATTCAATATTTTTATTATAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00109	85969	87985	-

Gene family

Gene family	subfamily
Transcription Factors Family	AP2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function GO:0003677 DNA binding GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000109s00010627.1	PF00847.15	AP2	67	123	1.00E-08
Glyur000109s00010627.1	PF00847.15	AP2	166	217	4.20E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.104
SRR1783600	control	0.107
SRR1783602	moderate drought stress	0.075
SRR1811619	moderate drought stress	0.120

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.185
DRR006520	Root Summer glycyrrhizin high producing strain	0.183
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.284
DRR006524	Root Summer glycyrrhizin low producing strain	0.282
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.133
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.154

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.130
SRR2868004	Drought Stress(Tissue:root)	0.078
SRR2967015	Control (Tissue:root)	0.232

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	2.016
SRR9715740	Leave	2.028
SRR9715741	Leave	1.427
SRR9715739	Root	0.137
SRR9715742	Root	0.404
SRR9715743	Root	0.019

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.061
SRR8749028	MeJA induced 9h	0.057
SRR8749029	MeJA induced 9h	0.085
SRR8749030	Uninduced	0.190
SRR8749031	Uninduced	0.065
SRR8749032	Uninduced	0.040

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.274
SRR8400027	Control-Root	0.422