Gene detail

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Gene detail information of Glyur000110s00011775.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G57520.1	0	seed imbibition 2
NR	XP_004513767.1	0	PREDICTED: probable galactinol--sucrose galactosyltransferase 2-like isoform X1 [Cicer arietinum]
COG	YP_004464004.1	5.00E-58	raffinose synthase [Mahella australiensis 50-1 BON]
Swissprot	tr\|Q94A08\|RFS2_ARATH	0	Probable galactinol--sucrose galactosyltransferase 2
trEMBL	tr\|A0A072VID2\|A0A072VID2_MEDTR	0	Galactinol-raffinose galactosyltransferase {ECO:0000313\|EMBL:KEH41582.1}

Sequence

Transcript Sequence

>Glyur000110s00011775.1
ATGCTAAGGACAACATCATTAGCTTCAGCACAGTCCACAACAGCGTGGATTCCTCTTTGGCGGGAGCCACATCGCAATCACTCTAATTCGCGCTTAACCTTTACAATCAAGTGTTCCAACATGACGGTTACGCCTAAGATTTCGGTCAAAGACGGGAACCTTGTAGTCCACGGGAAGACCATACTAACTGGAGTACCAGACAACATTGTGCTGACTCCAGGAACTGGAAAGGGCCTTGTGACTGGTGCATTCATTGGTGCCACTGCTTCCAACACCAAATGCCTCCATGTGTTTCCCATGGGTGTCTTAGAGGATCTACGATTCTTGTGTTGTTTCCGGTTCAAGTTGTGGTGGATGACTCATAGAGTGGGGACTTGTGGGAGGGATGTCCCTCTGGAGACCCAATTCATGCTTATAGAGAGCAGCAAGGACAGTAAGAATCACAAGGAGGATTCTCCAACCATCTACACTGTCTTGCTTCCTCTCCTGGAAGGCCAGTTCCGAGCTGAGATCCTGCTGTTGAGACCAATCAAGGACTTCACTTGGTCTACATGCATGCTGGGACTAACCCCTTTGAAGTCATCAACCAAGCTGTCAAAAAAACATATGCAAACTTTCCATCACCGTGAGAAGAAAAAACTGCCATCTTTTCTTGACTGGTTTGGATGGTGCACATGGGATGCTTTCTATACTGATGTCACAGCAGAGGGTGTTGAGGAAGGCCTGAGAAGCCTAGCAGAAGGAGGTGCATCTCCACGGTTCCTCATCATAGATGATGGTTGGCAACAGATTGAGAAAGGAGCACAGTTTGCTACTAGGTTGACTGGTATTAAAGAGAACACTAAATTTCAAAAGAATGGACAGAGCAATGATACAATACCAGGCCTAAAGCATGTTGTAGATGAAACAAAGCAACGCCACAATGTGAAATATGTTTATGTTTGGCATGCTCTAGCTGGTTATTGGGGTGGAGTGAAGCCAGCAGCAAGTGGAATGGAACATTATGACACTGCCTTGGCATACCCAATACATTCTCCAGGTATCCTAGGAAATCAACCAGATGTTGTCATGGATAGCTTGGCTGTTCATGGCTTGGGCCTGGTGCACCCAAAGAAGGCTTTTGATTTCTACAATGAGCTCCATGCTTACTTGGCTTCATGTGGAGTAGATGGGGTAAAGGTTGATGTGCAAAACATCATTGAGACCCTTGGTTCAGGACATGGTGGCAGGGTCTCACTCACACGCAGCTATCACCAGGCGCTCGAGGCCTCCATTGCTCGTAATTTCCCAGACAATGGATGCATTGCCTGCATGTGTCACAATACTGATGGCCTTTATAGTGCCAAGCAGACTGCTGTAGTGAGAGCTTCTGATGACTTTTACCCACATGATCCTGCTTCCCACACCATTCACATTTCATCTGTTGCATATAACTCGCTTTTCCTAGGAGAATTCATGCAACCTGACTGGGACATGTTTCATAGTTTACATCCAGCGGCGGAGTATCATGCTGCAGCTCGTGCAATCAGTGGAGGTCCCATTTATGTCAGTGATAAGCCAGGAAGGCACAATTTTGATCTTCTTAAGAAATTGGTTCTCCCTGATGGTTCAGTTCTTCGTGCTCAGTTGCCCGGCCGGCCCACTATTGACTCTTTCTTTGTTGATCCAGCAAGAGATGGGACCAGGTTTATAGAGAAGAAAAACCGTATTCATTGTGCAACCCCTGGAACACTCAGTGGCTCTGTTTGTACCTCTGATGTTGACTCCATTGCTCAAGTAGCTGGTGCTGATTGGAATGGAGATGCTATTGTTTATGCCTACAGATCAGGTGAAGTAATTCGGCTACCAAAAAGTGCTTCAGTGCCAGTGACACTAAAAGTCCTAGAGTATGAACTTTTCCATTTCTGTCCAATCAAGGAAATCACACCAAGTATTTCATTTGCACCAATTGGGCTATTGGATATGTTTAACACTGGAGGAGCTGTGGAGCAGTTTGAAATCCATAATAAAGCATGTGAAGTGCATGATGGGGAATCCTCATCAAATTCAAATCTATTCAGTTCTGATGGAGCAGCAACAGCATCTGTTACCCTTAGAGTAAGGGGAAGTGGGAGATTTGGGGTTTACTCCTCCCATAGGCCACTGAAGTGTGTAGTGGGTGACGATGAAACCGAGTTCAACTATGATTTGGAGACTGGGAGGAGTAACATATCAGTGGTAGGAGAGAATGATCAAGTTCTTTGCTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00110	182509	188225	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH36

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K06617	E2.4.1.82	EC:2.4.1.82	Galactose metabolism	map00052

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000110s00011775.1	PF05691.7	Raffinose_syn	47	171	3.70E-39
Glyur000110s00011775.1	PF05691.7	Raffinose_syn	192	562	3.40E-182
Glyur000110s00011775.1	PF05691.7	Raffinose_syn	565	731	4.20E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.085
SRR1783600	control	0.116
SRR1783602	moderate drought stress	0.075
SRR1811619	moderate drought stress	0.116

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.082
DRR006520	Root Summer glycyrrhizin high producing strain	0.095
DRR006521	Root Winter glycyrrhizin high producing strain	0.381
DRR006522	Root Winter glycyrrhizin high producing strain	0.284
DRR006523	Root Summer glycyrrhizin low producing strain	0.128
DRR006524	Root Summer glycyrrhizin low producing strain	0.178
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.041
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.053

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.209
SRR2868004	Drought Stress(Tissue:root)	0.258
SRR2967015	Control (Tissue:root)	0.161

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.267
SRR9715740	Leave	0.163
SRR9715741	Leave	0.299
SRR9715739	Root	0.000
SRR9715742	Root	0.037
SRR9715743	Root	0.060

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.215
SRR8749028	MeJA induced 9h	0.827
SRR8749029	MeJA induced 9h	0.064
SRR8749030	Uninduced	0.061
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.078

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.337
SRR8400027	Control-Root	0.260