Gene detail information of Glyur000110s00011776.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G07970.1 | 6.00E-59 | Pectin lyase-like superfamily protein |
| NR | KHM99814.1 | 9.03E-112 | Polygalacturonase [Glycine soja] |
| COG | YP_001179193.1 | 9.00E-26 | galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903] |
| Swissprot | tr|P35336|PGLR_ACTDE | 9.00E-85 | Polygalacturonase (Precursor) |
| trEMBL | tr|I1JG84|I1JG84_SOYBN | 3.00E-112 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G31540.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00110 | 193647 | 197462 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000110s00011776.1 | PF00295.12 | Glyco_hydro_28 | 87 | 232 | 2.50E-45 |
| Glyur000110s00011776.1 | PF00295.12 | Glyco_hydro_28 | 233 | 293 | 1.50E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.075 |
| SRR1783600 | control | 0.073 |
| SRR1783602 | moderate drought stress | 0.075 |
| SRR1811619 | moderate drought stress | 0.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.194 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.255 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.893 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.894 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.955 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.959 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.149 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.128 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.372 |
| SRR9715740 | Leave | 0.034 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.266 |
| SRR9715743 | Root | 0.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.232 |
| SRR8400027 | Control-Root | 0.430 |