Gene detail information of Glyur000110s00011782.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G41770.1 | 0 | Protein of unknown function (DUF288) |
| NR | XP_004513856.1 | 0 | PREDICTED: uncharacterized protein LOC101510562 [Cicer arietinum] |
| trEMBL | tr|I1JG92|I1JG92_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G32000.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00110 | 214999 | 219022 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000110s00011782.1 | PF03385.12 | DUF288 | 366 | 477 | 9.00E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.096 |
| SRR1783600 | control | 10.658 |
| SRR1783602 | moderate drought stress | 9.766 |
| SRR1811619 | moderate drought stress | 9.907 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.472 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.055 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.158 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.022 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.269 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.011 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.638 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.928 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 37.199 |
| SRR2868004 | Drought Stress(Tissue:root) | 29.397 |
| SRR2967015 | Control (Tissue:root) | 29.688 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.946 |
| SRR9715740 | Leave | 8.125 |
| SRR9715741 | Leave | 8.404 |
| SRR9715739 | Root | 12.487 |
| SRR9715742 | Root | 24.865 |
| SRR9715743 | Root | 21.743 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.468 |
| SRR8749028 | MeJA induced 9h | 8.978 |
| SRR8749029 | MeJA induced 9h | 3.973 |
| SRR8749030 | Uninduced | 3.571 |
| SRR8749031 | Uninduced | 1.915 |
| SRR8749032 | Uninduced | 0.922 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 27.087 |
| SRR8400027 | Control-Root | 34.893 |