Gene detail information of Glyur000110s00011783.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13630.10magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH)
NRKHN13947.10Magnesium-chelatase subunit H [Glycine soja]
COGYP_001866414.10magnesium chelatase subunit H [Nostoc punctiforme PCC 73102]
Swissprottr|Q9FNB0|CHLH_ARATH0Magnesium-chelatase subunit ChlH, chloroplastic (Precursor)
trEMBLtr|I1LAA1|I1LAA1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G20570.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00110220081226326-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03403chlH, bchH EC:6.6.1.1 Porphyrin and chlorophyll metabolism map00860


Gene Ontology

biological_process

GO:0009058  biosynthetic process

GO:0015995  chlorophyll biosynthetic process


molecular_function

GO:0016851  magnesium chelatase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000110s00011783.1PF11965.3DUF3479822441.90E-49
Glyur000110s00011783.1PF02514.11CobN-Mg_chel24813660


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.599
SRR1783600control4.543
SRR1783602moderate drought stress2.805
SRR1811619moderate drought stress2.810

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.330
DRR006520Root Summer glycyrrhizin high producing strain2.382
DRR006521Root Winter glycyrrhizin high producing strain4.059
DRR006522Root Winter glycyrrhizin high producing strain3.947
DRR006523Root Summer glycyrrhizin low producing strain3.192
DRR006524Root Summer glycyrrhizin low producing strain3.152
DRR006525Leaf Summer glycyrrhizin high producing strain425.621
DRR006526Leaf Summer glycyrrhizin high producing strain423.811

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.299
SRR2868004Drought Stress(Tissue:root)21.630
SRR2967015Control (Tissue:root)6.628

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave292.736
SRR9715740Leave321.987
SRR9715741Leave244.589
SRR9715739Root1.601
SRR9715742Root9.650
SRR9715743Root8.646

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.127
SRR8749028MeJA induced 9h4.062
SRR8749029MeJA induced 9h1.282
SRR8749030Uninduced0.677
SRR8749031Uninduced0.048
SRR8749032Uninduced0.337

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.487
SRR8400027Control-Root7.689

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved