Gene detail information of Glyur000110s00011794.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57390.2 | 1.00E-20 | AGAMOUS-like 18 |
| NR | XP_007145592.1 | 3.88E-102 | hypothetical protein PHAVU_007G251600g [Phaseolus vulgaris] |
| Swissprot | tr|Q9M2K8|AGL18_ARATH | 2.00E-23 | Agamous-like MADS-box protein AGL18 |
| trEMBL | tr|V7BLX2|V7BLX2_PHAVU | 1.00E-102 | Uncharacterized protein {ECO:0000313|EMBL:ESW17586.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00110 | 316698 | 319657 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000110s00011794.1 | PF01486.12 | K-box | 28 | 112 | 6.50E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.498 |
| SRR1783600 | control | 0.581 |
| SRR1783602 | moderate drought stress | 0.455 |
| SRR1811619 | moderate drought stress | 0.573 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.582 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.577 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.049 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.086 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.514 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.388 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.248 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.719 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.045 |
| SRR2967015 | Control (Tissue:root) | 1.903 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.036 |
| SRR9715740 | Leave | 0.991 |
| SRR9715741 | Leave | 0.630 |
| SRR9715739 | Root | 0.174 |
| SRR9715742 | Root | 0.806 |
| SRR9715743 | Root | 0.670 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.191 |
| SRR8749030 | Uninduced | 1.547 |
| SRR8749031 | Uninduced | 1.285 |
| SRR8749032 | Uninduced | 0.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.551 |
| SRR8400027 | Control-Root | 1.465 |