Gene detail information of Glyur000111s00011050.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G26900.10HIS HF
NRXP_003551923.10PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic-like [Glycine max]
COGYP_007244255.10imidazole glycerol phosphate synthase, glutamine amidotransferase subunit [Thioflavicoccus mobilis 8321]
Swissprottr|Q9SZ30|HIS4_ARATH0Cyclase (Precursor)
trEMBLtr|I1N0Y1|I1N0Y1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G12920.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00111143278149908-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01663HIS7 EC:2.4.2.- 4.1.3.- Biosynthesis of amino acids map01230
Histidine metabolismmap00340


Gene Ontology

biological_process

GO:0000105  histidine biosynthetic process

GO:0008152  metabolic process


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000107  imidazoleglycerol-phosphate synthase activity

GO:0003824  catalytic activity

GO:0016763  transferase activity, transferring pentosyl groups

GO:0016833  oxo-acid-lyase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000111s00011050.1PF00117.23GATase542412.10E-28
Glyur000111s00011050.1PF00977.16His_biosynth2815723.30E-45


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.037
SRR1783600control16.874
SRR1783602moderate drought stress14.106
SRR1811619moderate drought stress13.854

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.121
DRR006520Root Summer glycyrrhizin high producing strain22.174
DRR006521Root Winter glycyrrhizin high producing strain14.714
DRR006522Root Winter glycyrrhizin high producing strain14.323
DRR006523Root Summer glycyrrhizin low producing strain26.770
DRR006524Root Summer glycyrrhizin low producing strain26.872
DRR006525Leaf Summer glycyrrhizin high producing strain7.306
DRR006526Leaf Summer glycyrrhizin high producing strain7.365

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)40.379
SRR2868004Drought Stress(Tissue:root)29.413
SRR2967015Control (Tissue:root)30.726

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.063
SRR9715740Leave11.299
SRR9715741Leave17.378
SRR9715739Root22.033
SRR9715742Root25.434
SRR9715743Root26.606

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h28.833
SRR8749028MeJA induced 9h32.812
SRR8749029MeJA induced 9h24.515
SRR8749030Uninduced22.171
SRR8749031Uninduced11.487
SRR8749032Uninduced11.196

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root35.231
SRR8400027Control-Root37.353

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved