Gene detail information of Glyur000111s00011060.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G20800.1 | 1.00E-132 | Cell differentiation, Rcd1-like protein |
| NR | XP_004515427.1 | 0 | PREDICTED: cell differentiation protein RCD1 homolog [Cicer arietinum] |
| trEMBL | tr|A0A061GSY1|A0A061GSY1_THECC | 0 | Cell differentiation, Rcd1-like protein isoform 1 {ECO:0000313|EMBL:EOY32528.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00111 | 184847 | 192174 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Rcd1-like |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000111s00011060.1 | PF04078.8 | Rcd1 | 43 | 118 | 2.40E-31 |
| Glyur000111s00011060.1 | PF04078.8 | Rcd1 | 117 | 273 | 5.70E-77 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 45.117 |
| SRR1783600 | control | 45.228 |
| SRR1783602 | moderate drought stress | 37.898 |
| SRR1811619 | moderate drought stress | 37.726 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 38.572 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 38.747 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 38.501 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 37.044 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 45.241 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 44.853 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.918 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 50.343 |
| SRR2868004 | Drought Stress(Tissue:root) | 40.955 |
| SRR2967015 | Control (Tissue:root) | 43.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 23.286 |
| SRR9715740 | Leave | 23.131 |
| SRR9715741 | Leave | 27.346 |
| SRR9715739 | Root | 22.984 |
| SRR9715742 | Root | 22.129 |
| SRR9715743 | Root | 20.526 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 39.224 |
| SRR8749028 | MeJA induced 9h | 35.263 |
| SRR8749029 | MeJA induced 9h | 23.240 |
| SRR8749030 | Uninduced | 18.189 |
| SRR8749031 | Uninduced | 12.613 |
| SRR8749032 | Uninduced | 12.264 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 47.786 |
| SRR8400027 | Control-Root | 44.878 |