Gene detail information of Glyur000111s00011061.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G20440.20Alpha amylase family protein
NRXP_004513877.10PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic-like [Cicer arietinum]
COGYP_002603621.12.00E-134protein Glprotein GB2 [Desulfobacterium autotrophicum HRM2]
Swissprottr|D2WL32|GLGB3_ARATH01,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic (Precursor)
trEMBLtr|A0A072UXT6|A0A072UXT6_MEDTR01,4-alpha-glucan-branching enzyme/amyloplastic protein {ECO:0000313|EMBL:KEH33878.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00111193372203347-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCBM48,CBM48,GH13


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00700GBE1, glgB EC:2.4.1.18 Starch and sucrose metabolism map00500


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0005978  glycogen biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0003844  1,4-alpha-glucan branching enzyme activity

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0043169  cation binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000111s00011061.1PF02922.13CBM_481211840.00012
Glyur000111s00011061.1PF00128.19Alpha-amylase4174831.60E-12
Glyur000111s00011061.1PF02806.13Alpha-amylase_C7958881.80E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.266
SRR1783600control5.101
SRR1783602moderate drought stress7.546
SRR1811619moderate drought stress7.381

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.603
DRR006520Root Summer glycyrrhizin high producing strain4.434
DRR006521Root Winter glycyrrhizin high producing strain3.189
DRR006522Root Winter glycyrrhizin high producing strain3.040
DRR006523Root Summer glycyrrhizin low producing strain5.029
DRR006524Root Summer glycyrrhizin low producing strain4.948
DRR006525Leaf Summer glycyrrhizin high producing strain4.870
DRR006526Leaf Summer glycyrrhizin high producing strain4.928

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.482
SRR2868004Drought Stress(Tissue:root)4.503
SRR2967015Control (Tissue:root)6.372

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.807
SRR9715740Leave4.789
SRR9715741Leave3.391
SRR9715739Root0.722
SRR9715742Root2.429
SRR9715743Root1.928

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.291
SRR8749028MeJA induced 9h9.507
SRR8749029MeJA induced 9h6.824
SRR8749030Uninduced2.329
SRR8749031Uninduced0.929
SRR8749032Uninduced1.382

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.663
SRR8400027Control-Root6.063

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved