Gene detail information of Glyur000111s00011065.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G56930.1 | 2.00E-47 | CCCH-type zinc finger family protein |
| NR | XP_004513883.1 | 0 | PREDICTED: uncharacterized protein LOC101495956 isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9LTS7|C3H65_ARATH | 1.00E-49 | Zinc finger CCCH domain-containing protein 65 |
| trEMBL | tr|G7K4R9|G7K4R9_MEDTR | 0 | Zinc finger C-x8-C-x5-C-x3-H type protein {ECO:0000313|EMBL:AET00839.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00111 | 227942 | 234385 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.651 |
| SRR1783600 | control | 6.670 |
| SRR1783602 | moderate drought stress | 13.118 |
| SRR1811619 | moderate drought stress | 13.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.528 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.547 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.782 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.701 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.946 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.971 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.019 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.102 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.702 |
| SRR2967015 | Control (Tissue:root) | 10.444 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.065 |
| SRR9715740 | Leave | 4.853 |
| SRR9715741 | Leave | 5.301 |
| SRR9715739 | Root | 0.228 |
| SRR9715742 | Root | 2.454 |
| SRR9715743 | Root | 1.938 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.146 |
| SRR8749028 | MeJA induced 9h | 21.699 |
| SRR8749029 | MeJA induced 9h | 9.530 |
| SRR8749030 | Uninduced | 12.120 |
| SRR8749031 | Uninduced | 8.648 |
| SRR8749032 | Uninduced | 5.504 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.311 |
| SRR8400027 | Control-Root | 11.047 |