Gene detail information of Glyur000111s00011076.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G24830.19.00E-120zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein
NRXP_004513890.10PREDICTED: zinc finger CCCH domain-containing protein 18-like [Cicer arietinum]
Swissprottr|Q6K687|C3H18_ORYSJ0Zinc finger CCCH domain-containing protein 18
trEMBLtr|I1N0J9|I1N0J9_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G10210.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00111282091287835+


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000111s00011076.1PF01585.18G-patch2963379.50E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.480
SRR1783600control11.362
SRR1783602moderate drought stress11.362
SRR1811619moderate drought stress11.170

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.249
DRR006520Root Summer glycyrrhizin high producing strain13.574
DRR006521Root Winter glycyrrhizin high producing strain18.440
DRR006522Root Winter glycyrrhizin high producing strain17.970
DRR006523Root Summer glycyrrhizin low producing strain12.002
DRR006524Root Summer glycyrrhizin low producing strain12.490
DRR006525Leaf Summer glycyrrhizin high producing strain6.821
DRR006526Leaf Summer glycyrrhizin high producing strain6.622

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.726
SRR2868004Drought Stress(Tissue:root)17.340
SRR2967015Control (Tissue:root)17.566

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.956
SRR9715740Leave12.564
SRR9715741Leave13.148
SRR9715739Root2.270
SRR9715742Root9.609
SRR9715743Root8.082

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.362
SRR8749028MeJA induced 9h19.624
SRR8749029MeJA induced 9h11.616
SRR8749030Uninduced18.210
SRR8749031Uninduced12.182
SRR8749032Uninduced10.415

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root25.176
SRR8400027Control-Root22.886

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved